Hb_002851_020

Information

Type -
Description -
Location Contig2851: 36784-42247
Sequence    

Annotation

kegg
ID rcu:RCOM_1594450
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.21)
nr
ID XP_012071867.1
description PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
swissprot
ID O94468
description Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1
trembl
ID A0A067KQU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04437 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dna-3-methyladenine glycosylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29853: 40942-46950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_020 0.0 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
2 Hb_000368_010 0.0835683174 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
3 Hb_002061_040 0.0907598865 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
4 Hb_011173_050 0.0940800681 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
5 Hb_002676_090 0.0945632164 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
6 Hb_005736_060 0.0951334048 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
7 Hb_020400_050 0.0951827155 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
8 Hb_033642_080 0.0987121719 - - V-type proton ATPase subunit E [Hevea brasiliensis]
9 Hb_005568_120 0.0988128485 - - Prephenate dehydratase [Hevea brasiliensis]
10 Hb_000069_420 0.1001788138 - - Beclin-1, putative [Ricinus communis]
11 Hb_001545_160 0.1007893264 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
12 Hb_011214_020 0.1010284549 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
13 Hb_012114_040 0.1019900876 - - DNA binding protein, putative [Ricinus communis]
14 Hb_001222_080 0.1020820554 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_000111_330 0.1033051306 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
16 Hb_000506_120 0.1038900076 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
17 Hb_034406_030 0.1041721099 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
18 Hb_000373_130 0.1047991633 - - PREDICTED: protein FAM188A [Jatropha curcas]
19 Hb_000107_160 0.1054256776 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
20 Hb_004994_140 0.1066009999 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002851_020 Hb_002851_020 Hb_000368_010 Hb_000368_010 Hb_002851_020--Hb_000368_010 Hb_002061_040 Hb_002061_040 Hb_002851_020--Hb_002061_040 Hb_011173_050 Hb_011173_050 Hb_002851_020--Hb_011173_050 Hb_002676_090 Hb_002676_090 Hb_002851_020--Hb_002676_090 Hb_005736_060 Hb_005736_060 Hb_002851_020--Hb_005736_060 Hb_020400_050 Hb_020400_050 Hb_002851_020--Hb_020400_050 Hb_000347_410 Hb_000347_410 Hb_000368_010--Hb_000347_410 Hb_000368_010--Hb_011173_050 Hb_000111_330 Hb_000111_330 Hb_000368_010--Hb_000111_330 Hb_001059_030 Hb_001059_030 Hb_000368_010--Hb_001059_030 Hb_004586_320 Hb_004586_320 Hb_000368_010--Hb_004586_320 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_011173_050--Hb_000111_330 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_004567_120 Hb_004567_120 Hb_002676_090--Hb_004567_120 Hb_002676_090--Hb_005568_120 Hb_004143_150 Hb_004143_150 Hb_002676_090--Hb_004143_150 Hb_004899_370 Hb_004899_370 Hb_002676_090--Hb_004899_370 Hb_000107_160 Hb_000107_160 Hb_002676_090--Hb_000107_160 Hb_001545_170 Hb_001545_170 Hb_002676_090--Hb_001545_170 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_000125_190 Hb_000125_190 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_000025_120 Hb_000025_120 Hb_020400_050--Hb_000025_120 Hb_020400_050--Hb_002061_040 Hb_020400_050--Hb_012053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12834 8.85677 3.44573 7.84284 6.46301 5.9882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9319 21.2453 13.2776 9.64508 7.37355

CAGE analysis