Hb_002851_060

Information

Type -
Description -
Location Contig2851: 105563-106970
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19770g
description POPTRDRAFT_567287; hypothetical protein
nr
ID KHG00134.1
description Clathrin light chain 2 -like protein [Gossypium arboreum]
swissprot
ID O04209
description Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
trembl
ID A0A0B0MKZ3
description Clathrin light chain 2-like protein OS=Gossypium arboreum GN=F383_17758 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin light chain 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29859: 106285-107182
cDNA
(Sanger)
(ID:Location)		 004_L17.ab1: 106285-107182 , 015_E02.ab1: 106285-107182 , 037_G05.ab1: 106285-107182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_060 0.0 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
2 Hb_044662_040 0.0886109927 - - -
3 Hb_011537_040 0.0926087972 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
4 Hb_004374_010 0.1010552604 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
5 Hb_017098_030 0.1018333427 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
6 Hb_005271_070 0.1104665891 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
7 Hb_178345_010 0.1112314985 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
8 Hb_001956_120 0.1161195879 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013479_020 0.1190086333 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_001504_170 0.1215875624 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
11 Hb_000028_050 0.1222487792 - - aldose-1-epimerase, putative [Ricinus communis]
12 Hb_000977_140 0.1254350291 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
13 Hb_004502_030 0.1268886286 - - unknown [Populus trichocarpa]
14 Hb_001437_300 0.1280660279 - - -
15 Hb_005015_010 0.1284112747 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
16 Hb_006452_190 0.1294037062 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_003055_050 0.1300751132 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
18 Hb_004607_120 0.1312245728 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
19 Hb_007441_340 0.1312529497 - - protein with unknown function [Ricinus communis]
20 Hb_000258_410 0.1316465897 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]

Gene co-expression network

sample Hb_002851_060 Hb_002851_060 Hb_044662_040 Hb_044662_040 Hb_002851_060--Hb_044662_040 Hb_011537_040 Hb_011537_040 Hb_002851_060--Hb_011537_040 Hb_004374_010 Hb_004374_010 Hb_002851_060--Hb_004374_010 Hb_017098_030 Hb_017098_030 Hb_002851_060--Hb_017098_030 Hb_005271_070 Hb_005271_070 Hb_002851_060--Hb_005271_070 Hb_178345_010 Hb_178345_010 Hb_002851_060--Hb_178345_010 Hb_004607_120 Hb_004607_120 Hb_044662_040--Hb_004607_120 Hb_004502_030 Hb_004502_030 Hb_044662_040--Hb_004502_030 Hb_044662_040--Hb_005271_070 Hb_007632_250 Hb_007632_250 Hb_044662_040--Hb_007632_250 Hb_000977_140 Hb_000977_140 Hb_044662_040--Hb_000977_140 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_011537_040--Hb_004374_010 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_001437_300 Hb_001437_300 Hb_017098_030--Hb_001437_300 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_017098_030--Hb_004502_030 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005741_020 Hb_005741_020 Hb_005271_070--Hb_005741_020 Hb_000500_290 Hb_000500_290 Hb_005271_070--Hb_000500_290 Hb_005271_070--Hb_004374_010 Hb_178345_010--Hb_044662_040 Hb_178345_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_178345_010--Hb_012395_100 Hb_000175_520 Hb_000175_520 Hb_178345_010--Hb_000175_520 Hb_004375_060 Hb_004375_060 Hb_178345_010--Hb_004375_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8965 2.26434 4.01298 2.05583 32.8854 32.0513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2408 13.9871 4.29296 3.90477 3.14321

CAGE analysis