Hb_002851_070

Information

Type -
Description -
Location Contig2851: 108237-110459
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02780g
description POPTRDRAFT_1080270; hypothetical protein
nr
ID XP_012087659.1
description PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PEK0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016491
description dihydrofolate reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29860: 108267-110350
cDNA
(Sanger)
(ID:Location)		 021_E18.ab1: 108673-110350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_070 0.0 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
2 Hb_023771_030 0.0627409249 - - unnamed protein product [Vitis vinifera]
3 Hb_009693_010 0.0960871041 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
4 Hb_000880_040 0.098866337 - - -
5 Hb_000152_120 0.1016810215 - - alpha-l-fucosidase, putative [Ricinus communis]
6 Hb_004446_060 0.1020187794 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_007007_130 0.103642561 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
8 Hb_001244_070 0.1060884029 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
9 Hb_006916_130 0.1118781317 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
10 Hb_002217_060 0.1123760191 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
11 Hb_003592_060 0.1135104068 - - hypothetical protein F383_11017 [Gossypium arboreum]
12 Hb_000365_440 0.1156108681 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
13 Hb_001500_080 0.1182044308 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
14 Hb_000732_220 0.1190940651 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
15 Hb_001104_020 0.123699763 - - DNA binding protein, putative [Ricinus communis]
16 Hb_019570_010 0.1251049331 - - lyase, putative [Ricinus communis]
17 Hb_000934_240 0.1290707841 - - PREDICTED: peroxidase 13 [Jatropha curcas]
18 Hb_004832_010 0.1291588643 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000018_120 0.1297745414 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001437_260 0.131384699 - - PREDICTED: protein FAM98B-like [Jatropha curcas]

Gene co-expression network

sample Hb_002851_070 Hb_002851_070 Hb_023771_030 Hb_023771_030 Hb_002851_070--Hb_023771_030 Hb_009693_010 Hb_009693_010 Hb_002851_070--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_002851_070--Hb_000880_040 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_004446_060 Hb_004446_060 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130 Hb_006916_130 Hb_006916_130 Hb_023771_030--Hb_006916_130 Hb_002217_060 Hb_002217_060 Hb_023771_030--Hb_002217_060 Hb_012813_020 Hb_012813_020 Hb_023771_030--Hb_012813_020 Hb_023771_030--Hb_009693_010 Hb_003592_060 Hb_003592_060 Hb_023771_030--Hb_003592_060 Hb_009693_010--Hb_000880_040 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_009693_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_009693_010--Hb_006266_010 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_000152_120--Hb_001244_070 Hb_001104_020 Hb_001104_020 Hb_000152_120--Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_000152_120--Hb_000732_220 Hb_000951_090 Hb_000951_090 Hb_000152_120--Hb_000951_090 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_002918_120 Hb_002918_120 Hb_004446_060--Hb_002918_120 Hb_001437_260 Hb_001437_260 Hb_004446_060--Hb_001437_260 Hb_004446_060--Hb_007007_130 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_000152_770 Hb_000152_770 Hb_007007_130--Hb_000152_770 Hb_007007_130--Hb_023771_030 Hb_007007_130--Hb_001500_080 Hb_007007_130--Hb_001437_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0125876 2.54878 47.3179 24.0005 0 0.0249159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.286558 0.180361 0.127423 28.4992 24.5052

CAGE analysis