Hb_002851_080

Information

Type -
Description -
Location Contig2851: 118240-121543
Sequence    

Annotation

kegg
ID rcu:RCOM_0526220
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_012091450.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LKS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01444 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29861: 120344-120500 , PASA_asmbl_29862: 121217-122019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002851_080 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
2 Hb_001006_340 0.1292219554 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
3 Hb_008114_050 0.1344078504 - - hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
4 Hb_012146_050 0.1355996569 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
5 Hb_001431_120 0.1483113321 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
6 Hb_000256_020 0.1498343238 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
7 Hb_004411_030 0.155101974 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
8 Hb_009367_080 0.1552489723 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
9 Hb_000631_110 0.1567248978 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
10 Hb_002005_080 0.1573536507 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
11 Hb_011609_150 0.1578146316 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
12 Hb_001754_040 0.1604188996 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
13 Hb_000061_510 0.1606722305 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
14 Hb_004064_050 0.1640405151 - - Structural maintenance of chromosome, putative [Ricinus communis]
15 Hb_001381_050 0.1650135415 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_000105_030 0.1660258591 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
17 Hb_000406_020 0.1664676425 - - -
18 Hb_002374_210 0.1671018327 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
19 Hb_003211_040 0.1676426877 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
20 Hb_003498_130 0.1683137817 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]

Gene co-expression network

sample Hb_002851_080 Hb_002851_080 Hb_001006_340 Hb_001006_340 Hb_002851_080--Hb_001006_340 Hb_008114_050 Hb_008114_050 Hb_002851_080--Hb_008114_050 Hb_012146_050 Hb_012146_050 Hb_002851_080--Hb_012146_050 Hb_001431_120 Hb_001431_120 Hb_002851_080--Hb_001431_120 Hb_000256_020 Hb_000256_020 Hb_002851_080--Hb_000256_020 Hb_004411_030 Hb_004411_030 Hb_002851_080--Hb_004411_030 Hb_002005_080 Hb_002005_080 Hb_001006_340--Hb_002005_080 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_041327_010 Hb_041327_010 Hb_001006_340--Hb_041327_010 Hb_008114_050--Hb_012146_050 Hb_028872_070 Hb_028872_070 Hb_008114_050--Hb_028872_070 Hb_008114_050--Hb_000256_020 Hb_008114_050--Hb_001431_120 Hb_003645_060 Hb_003645_060 Hb_008114_050--Hb_003645_060 Hb_008114_050--Hb_001754_040 Hb_012146_050--Hb_001431_120 Hb_005402_040 Hb_005402_040 Hb_012146_050--Hb_005402_040 Hb_143489_010 Hb_143489_010 Hb_012146_050--Hb_143489_010 Hb_143489_020 Hb_143489_020 Hb_012146_050--Hb_143489_020 Hb_000788_070 Hb_000788_070 Hb_012146_050--Hb_000788_070 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_001431_120--Hb_005402_040 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_001723_140 Hb_001723_140 Hb_000256_020--Hb_001723_140 Hb_088144_020 Hb_088144_020 Hb_000256_020--Hb_088144_020 Hb_000256_020--Hb_004064_050 Hb_000184_150 Hb_000184_150 Hb_000256_020--Hb_000184_150 Hb_002045_250 Hb_002045_250 Hb_000256_020--Hb_002045_250 Hb_001171_030 Hb_001171_030 Hb_000256_020--Hb_001171_030 Hb_004411_030--Hb_041327_010 Hb_000037_220 Hb_000037_220 Hb_004411_030--Hb_000037_220 Hb_004411_030--Hb_001754_040 Hb_140049_080 Hb_140049_080 Hb_004411_030--Hb_140049_080 Hb_000003_100 Hb_000003_100 Hb_004411_030--Hb_000003_100 Hb_019840_030 Hb_019840_030 Hb_004411_030--Hb_019840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.594595 0.885419 0.633783 0.268951 0.645119 1.00833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0966509 0.0760578 0.790418 1.33128 0.788857

CAGE analysis