Hb_002863_010

Information

Type -
Description -
Location Contig2863: 2689-3480
Sequence    

Annotation

kegg
ID rcu:RCOM_1443450
description zinc finger protein, putative
nr
ID XP_012067431.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID A0A067LCT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26932 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29882: 2645-4494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002863_010 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
2 Hb_004607_120 0.1161638853 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
3 Hb_023675_010 0.1177698988 - - -
4 Hb_000175_520 0.1208595127 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_012395_100 0.124634799 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
6 Hb_007625_020 0.1275740901 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
7 Hb_000366_100 0.1312759154 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
8 Hb_004545_160 0.1340415627 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_178345_010 0.1355856 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
10 Hb_044662_040 0.1357339248 - - -
11 Hb_000622_100 0.1384604215 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
12 Hb_007992_030 0.1393657913 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
13 Hb_008016_010 0.1399716973 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
14 Hb_002851_060 0.1401544713 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
15 Hb_001504_170 0.1426433076 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
16 Hb_000977_140 0.1427638346 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
17 Hb_000752_060 0.142868296 - - expressed protein, putative [Ricinus communis]
18 Hb_003453_010 0.1461588714 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007632_250 0.1487429083 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000933_140 0.1490414268 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]

Gene co-expression network

sample Hb_002863_010 Hb_002863_010 Hb_004607_120 Hb_004607_120 Hb_002863_010--Hb_004607_120 Hb_023675_010 Hb_023675_010 Hb_002863_010--Hb_023675_010 Hb_000175_520 Hb_000175_520 Hb_002863_010--Hb_000175_520 Hb_012395_100 Hb_012395_100 Hb_002863_010--Hb_012395_100 Hb_007625_020 Hb_007625_020 Hb_002863_010--Hb_007625_020 Hb_000366_100 Hb_000366_100 Hb_002863_010--Hb_000366_100 Hb_044662_040 Hb_044662_040 Hb_004607_120--Hb_044662_040 Hb_004502_030 Hb_004502_030 Hb_004607_120--Hb_004502_030 Hb_007632_250 Hb_007632_250 Hb_004607_120--Hb_007632_250 Hb_002235_150 Hb_002235_150 Hb_004607_120--Hb_002235_150 Hb_000622_100 Hb_000622_100 Hb_004607_120--Hb_000622_100 Hb_023675_010--Hb_000366_100 Hb_036369_010 Hb_036369_010 Hb_023675_010--Hb_036369_010 Hb_004852_020 Hb_004852_020 Hb_023675_010--Hb_004852_020 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_001248_020 Hb_001248_020 Hb_023675_010--Hb_001248_020 Hb_023675_010--Hb_012395_100 Hb_000175_520--Hb_004852_020 Hb_002518_250 Hb_002518_250 Hb_000175_520--Hb_002518_250 Hb_002942_030 Hb_002942_030 Hb_000175_520--Hb_002942_030 Hb_000175_520--Hb_012395_100 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_007317_220 Hb_007317_220 Hb_000175_520--Hb_007317_220 Hb_012395_100--Hb_001248_020 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_012395_100--Hb_004852_020 Hb_007625_020--Hb_004545_160 Hb_012305_060 Hb_012305_060 Hb_007625_020--Hb_012305_060 Hb_007451_030 Hb_007451_030 Hb_007625_020--Hb_007451_030 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_000366_100--Hb_036369_010 Hb_000366_100--Hb_000752_060 Hb_000617_320 Hb_000617_320 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2114 2.73803 2.32366 6.64049 41.3674 39.9487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9254 32.6965 5.92839 2.00326 1.61763

CAGE analysis