Hb_002863_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2863: 64468-71751
Sequence    

Annotation

kegg
ID rcu:RCOM_0897880
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073448.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067KLU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06173 PE=4 SV=1
Gene Ontology
ID GO:0032550
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002863_100 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_009710_020 0.1467033149 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
3 Hb_000157_200 0.1836199966 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
4 Hb_000453_150 0.209247943 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
5 Hb_001622_010 0.2103931387 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_004097_120 0.2143252865 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_133748_010 0.2205840555 - - -
8 Hb_028472_010 0.2249968258 - - glycosyltransferase, putative [Ricinus communis]
9 Hb_026206_020 0.227951536 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
10 Hb_001882_130 0.2287924055 transcription factor TF Family: mTERF hypothetical protein VITISV_028996 [Vitis vinifera]
11 Hb_002035_090 0.2292188583 - - -
12 Hb_103865_010 0.2335717732 - - hypothetical protein 21 [Hevea brasiliensis]
13 Hb_000638_150 0.2384503537 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
14 Hb_001749_010 0.2389703794 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
15 Hb_009367_080 0.2390742528 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
16 Hb_129722_010 0.240244812 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
17 Hb_000357_120 0.2418129901 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
18 Hb_000206_190 0.2443577725 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
19 Hb_000256_120 0.2448427554 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
20 Hb_000137_020 0.2452829287 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]

Gene co-expression network

sample Hb_002863_100 Hb_002863_100 Hb_009710_020 Hb_009710_020 Hb_002863_100--Hb_009710_020 Hb_000157_200 Hb_000157_200 Hb_002863_100--Hb_000157_200 Hb_000453_150 Hb_000453_150 Hb_002863_100--Hb_000453_150 Hb_001622_010 Hb_001622_010 Hb_002863_100--Hb_001622_010 Hb_004097_120 Hb_004097_120 Hb_002863_100--Hb_004097_120 Hb_133748_010 Hb_133748_010 Hb_002863_100--Hb_133748_010 Hb_000256_120 Hb_000256_120 Hb_009710_020--Hb_000256_120 Hb_025964_040 Hb_025964_040 Hb_009710_020--Hb_025964_040 Hb_012539_030 Hb_012539_030 Hb_009710_020--Hb_012539_030 Hb_009710_020--Hb_001622_010 Hb_000638_150 Hb_000638_150 Hb_009710_020--Hb_000638_150 Hb_003203_020 Hb_003203_020 Hb_000157_200--Hb_003203_020 Hb_003430_060 Hb_003430_060 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_077048_010 Hb_077048_010 Hb_000453_150--Hb_077048_010 Hb_000537_140 Hb_000537_140 Hb_000453_150--Hb_000537_140 Hb_000453_150--Hb_000157_200 Hb_009367_080 Hb_009367_080 Hb_000453_150--Hb_009367_080 Hb_000322_180 Hb_000322_180 Hb_000453_150--Hb_000322_180 Hb_005260_040 Hb_005260_040 Hb_000453_150--Hb_005260_040 Hb_005464_030 Hb_005464_030 Hb_001622_010--Hb_005464_030 Hb_002196_010 Hb_002196_010 Hb_001622_010--Hb_002196_010 Hb_010531_050 Hb_010531_050 Hb_001622_010--Hb_010531_050 Hb_001865_040 Hb_001865_040 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_001882_130 Hb_001882_130 Hb_004097_120--Hb_001882_130 Hb_001008_170 Hb_001008_170 Hb_004097_120--Hb_001008_170 Hb_000661_110 Hb_000661_110 Hb_004097_120--Hb_000661_110 Hb_006185_060 Hb_006185_060 Hb_004097_120--Hb_006185_060 Hb_000479_150 Hb_000479_150 Hb_004097_120--Hb_000479_150 Hb_001221_140 Hb_001221_140 Hb_004097_120--Hb_001221_140 Hb_002035_080 Hb_002035_080 Hb_133748_010--Hb_002035_080 Hb_002035_090 Hb_002035_090 Hb_133748_010--Hb_002035_090 Hb_000098_020 Hb_000098_020 Hb_133748_010--Hb_000098_020 Hb_133748_010--Hb_010531_050 Hb_133748_010--Hb_001622_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6276 12.3812 6.15185 7.04923 1.05284 8.34276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225428 0.638654 5.10835 3.88279 3.30573

CAGE analysis