Hb_002864_010

Information

Type -
Description -
Location Contig2864: 28887-43704
Sequence    

Annotation

kegg
ID rcu:RCOM_0520190
description nonsense-mediated mRNA decay protein, putative
nr
ID XP_012075131.1
description PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
swissprot
ID Q9FJR0
description Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2
trembl
ID A0A067LBV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11864 PE=4 SV=1
Gene Ontology
ID GO:0005829
description regulator of nonsense transcripts 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29896: 31936-43601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002864_010 0.0 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
2 Hb_000264_030 0.0654852722 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
3 Hb_001080_230 0.0697742372 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
4 Hb_027472_050 0.071291786 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
5 Hb_000170_150 0.0723755296 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
6 Hb_000003_190 0.0781026808 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
7 Hb_013399_070 0.0786378004 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
8 Hb_003470_080 0.0834354251 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
9 Hb_000092_020 0.0836333672 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
10 Hb_005496_110 0.0843597658 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
11 Hb_011537_050 0.0892890602 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
12 Hb_003371_110 0.0894699902 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
13 Hb_002007_020 0.0908172147 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
14 Hb_000035_290 0.0913216441 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_074969_010 0.0919585128 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
16 Hb_000270_030 0.0933612558 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
17 Hb_000395_130 0.0973698601 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
18 Hb_001767_140 0.0974337717 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
19 Hb_001946_340 0.0990131874 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
20 Hb_001329_160 0.0990307317 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002864_010 Hb_002864_010 Hb_000264_030 Hb_000264_030 Hb_002864_010--Hb_000264_030 Hb_001080_230 Hb_001080_230 Hb_002864_010--Hb_001080_230 Hb_027472_050 Hb_027472_050 Hb_002864_010--Hb_027472_050 Hb_000170_150 Hb_000170_150 Hb_002864_010--Hb_000170_150 Hb_000003_190 Hb_000003_190 Hb_002864_010--Hb_000003_190 Hb_013399_070 Hb_013399_070 Hb_002864_010--Hb_013399_070 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_001799_050 Hb_001799_050 Hb_000264_030--Hb_001799_050 Hb_000289_040 Hb_000289_040 Hb_000264_030--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_000264_030--Hb_140049_040 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000166_130 Hb_000166_130 Hb_027472_050--Hb_000166_130 Hb_027472_050--Hb_003371_110 Hb_004412_010 Hb_004412_010 Hb_027472_050--Hb_004412_010 Hb_005731_030 Hb_005731_030 Hb_027472_050--Hb_005731_030 Hb_000035_290 Hb_000035_290 Hb_027472_050--Hb_000035_290 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_000170_150--Hb_003371_110 Hb_000170_150--Hb_003470_080 Hb_000170_150--Hb_000289_040 Hb_000003_190--Hb_000092_020 Hb_000003_190--Hb_003470_080 Hb_000003_190--Hb_002872_040 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1006 24.9501 8.43561 9.28707 12.7921 22.3835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8711 13.5503 7.46598 12.5916 14.1131

CAGE analysis