Hb_002864_050

Information

Type -
Description -
Location Contig2864: 72234-79478
Sequence    

Annotation

kegg
ID rcu:RCOM_0519920
description protein with unknown function
nr
ID XP_012083760.1
description PREDICTED: ras-related protein RABH1b [Jatropha curcas]
swissprot
ID O80501
description Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1
trembl
ID B9SS18
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0519920 PE=3 SV=1
Gene Ontology
ID GO:0005768
description ras-related protein rabh1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29898: 72263-79325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002864_050 0.0 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
2 Hb_000029_200 0.0510357613 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
3 Hb_002830_020 0.0644871962 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_007416_030 0.0680002683 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
5 Hb_165132_010 0.0684832544 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_101705_030 0.0732495051 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_002874_190 0.0740047579 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
8 Hb_000510_110 0.0752006061 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
9 Hb_001341_090 0.0762683242 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
10 Hb_000699_160 0.076307169 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
11 Hb_134949_020 0.0771367382 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
12 Hb_001484_070 0.079688038 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012573_070 0.0803111107 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001140_060 0.0804225541 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
15 Hb_001314_100 0.0809797537 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
16 Hb_012022_120 0.0817264092 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
17 Hb_005045_060 0.0826571306 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
18 Hb_003683_110 0.0839741615 - - JHL10I11.3 [Jatropha curcas]
19 Hb_001842_040 0.0842489075 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
20 Hb_005511_160 0.0847448411 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_002864_050 Hb_002864_050 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_002830_020 Hb_002830_020 Hb_002864_050--Hb_002830_020 Hb_007416_030 Hb_007416_030 Hb_002864_050--Hb_007416_030 Hb_165132_010 Hb_165132_010 Hb_002864_050--Hb_165132_010 Hb_101705_030 Hb_101705_030 Hb_002864_050--Hb_101705_030 Hb_002874_190 Hb_002874_190 Hb_002864_050--Hb_002874_190 Hb_000510_110 Hb_000510_110 Hb_000029_200--Hb_000510_110 Hb_003893_050 Hb_003893_050 Hb_000029_200--Hb_003893_050 Hb_001314_100 Hb_001314_100 Hb_000029_200--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_000029_200--Hb_012573_070 Hb_000029_200--Hb_007416_030 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_000201_120 Hb_000201_120 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_101705_030--Hb_002874_190 Hb_006117_070 Hb_006117_070 Hb_101705_030--Hb_006117_070 Hb_158467_010 Hb_158467_010 Hb_101705_030--Hb_158467_010 Hb_001140_060 Hb_001140_060 Hb_101705_030--Hb_001140_060 Hb_001604_080 Hb_001604_080 Hb_101705_030--Hb_001604_080 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1471 7.4411 21.0711 20.5532 25.3207 28.3326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3789 69.3665 36.7208 13.1031 11.4568

CAGE analysis