Hb_002868_010

Information

Type -
Description -
Location Contig2868: 10493-12949
Sequence    

Annotation

kegg
ID rcu:RCOM_0985630
description 60S ribosomal protein L30, putative
nr
ID XP_002528991.1
description 60S ribosomal protein L30, putative [Ricinus communis]
swissprot
ID O49884
description 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
trembl
ID B9SSM2
description 60S ribosomal protein L30, putative OS=Ricinus communis GN=RCOM_0985630 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29900: 10455-12874
cDNA
(Sanger)
(ID:Location)		 026_K24.ab1: 10456-12851 , 042_J16.ab1: 10458-12874 , 046_D05.ab1: 10461-12844

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002868_010 0.0 - - 60S ribosomal protein L30, putative [Ricinus communis]
2 Hb_003939_080 0.0340224719 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_210 0.0700225974 - - ribosomal protein l7ae, putative [Ricinus communis]
4 Hb_002007_060 0.0704291454 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
5 Hb_000000_160 0.07370932 - - PREDICTED: membrin-11 [Jatropha curcas]
6 Hb_011360_140 0.0747487648 - - 40S ribosomal protein S19, putative [Ricinus communis]
7 Hb_001512_070 0.0757902052 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
8 Hb_000661_250 0.0791725742 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
9 Hb_135545_010 0.0815628426 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_000866_270 0.0831456282 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
11 Hb_001159_140 0.0834501365 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
12 Hb_011381_060 0.0835437847 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
13 Hb_021419_020 0.0840022673 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_007590_050 0.0845739297 - - NudC domain-containing protein, putative [Ricinus communis]
15 Hb_001504_020 0.0846409447 - - 40S ribosomal protein S12A [Hevea brasiliensis]
16 Hb_000473_040 0.0848037852 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
17 Hb_000012_220 0.0851542408 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001235_190 0.0857745856 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_001540_010 0.0862440789 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
20 Hb_023226_040 0.0863621048 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002868_010 Hb_002868_010 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002007_060 Hb_002007_060 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_003939_080--Hb_001946_210 Hb_003939_080--Hb_011360_140 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_007101_150 Hb_007101_150 Hb_001512_070--Hb_007101_150 Hb_001512_070--Hb_001828_090 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_000684_090 Hb_000684_090 Hb_001512_070--Hb_000684_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
230.727 135.185 131.853 97.7558 196.017 228.462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
245.743 418.423 152.177 86.6255 46.0762

CAGE analysis