Hb_002869_040

Information

Type -
Description -
Location Contig2869: 32606-34769
Sequence    

Annotation

kegg
ID cic:CICLE_v10011857mg
description hypothetical protein
nr
ID XP_012076054.1
description PREDICTED: metal tolerance protein 4 [Jatropha curcas]
swissprot
ID Q10PP8
description Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1
trembl
ID A0A067KHJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12766 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29902: 33068-34101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002869_040 0.0 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
2 Hb_001957_050 0.0909172621 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_000167_090 0.1244069321 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003012_010 0.1268857299 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002548_010 0.131071761 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
6 Hb_006590_030 0.1321353737 - - unknown [Populus trichocarpa]
7 Hb_000373_110 0.1330883209 - - Nodulin, putative [Ricinus communis]
8 Hb_001808_010 0.1356980868 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
9 Hb_002422_010 0.1375115671 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
10 Hb_001104_250 0.1396519725 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
11 Hb_001414_120 0.1410414605 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
12 Hb_000433_060 0.1418477547 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
13 Hb_023536_020 0.1447534666 - - Nicotianamine synthase, putative [Ricinus communis]
14 Hb_002374_070 0.1463998508 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000769_050 0.1474379457 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
16 Hb_014214_010 0.1476671224 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
17 Hb_168031_010 0.1478364626 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
18 Hb_022264_010 0.1527229989 - - PREDICTED: uncharacterized protein LOC105795741 [Gossypium raimondii]
19 Hb_174644_010 0.153859897 - - -
20 Hb_000259_100 0.1539062699 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_002869_040 Hb_002869_040 Hb_001957_050 Hb_001957_050 Hb_002869_040--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_002869_040--Hb_000167_090 Hb_003012_010 Hb_003012_010 Hb_002869_040--Hb_003012_010 Hb_002548_010 Hb_002548_010 Hb_002869_040--Hb_002548_010 Hb_006590_030 Hb_006590_030 Hb_002869_040--Hb_006590_030 Hb_000373_110 Hb_000373_110 Hb_002869_040--Hb_000373_110 Hb_001957_050--Hb_006590_030 Hb_005040_010 Hb_005040_010 Hb_001957_050--Hb_005040_010 Hb_001957_050--Hb_000167_090 Hb_039410_010 Hb_039410_010 Hb_001957_050--Hb_039410_010 Hb_002420_030 Hb_002420_030 Hb_001957_050--Hb_002420_030 Hb_000167_090--Hb_002548_010 Hb_000167_090--Hb_039410_010 Hb_000203_090 Hb_000203_090 Hb_000167_090--Hb_000203_090 Hb_002422_010 Hb_002422_010 Hb_000167_090--Hb_002422_010 Hb_001104_250 Hb_001104_250 Hb_000167_090--Hb_001104_250 Hb_000769_050 Hb_000769_050 Hb_000167_090--Hb_000769_050 Hb_003012_010--Hb_002422_010 Hb_000286_210 Hb_000286_210 Hb_003012_010--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_003012_010--Hb_151616_010 Hb_001808_010 Hb_001808_010 Hb_003012_010--Hb_001808_010 Hb_002639_120 Hb_002639_120 Hb_003012_010--Hb_002639_120 Hb_001318_180 Hb_001318_180 Hb_003012_010--Hb_001318_180 Hb_002548_010--Hb_001104_250 Hb_002548_010--Hb_000769_050 Hb_002548_010--Hb_000203_090 Hb_000152_090 Hb_000152_090 Hb_002548_010--Hb_000152_090 Hb_182625_010 Hb_182625_010 Hb_002548_010--Hb_182625_010 Hb_006590_030--Hb_005040_010 Hb_000953_160 Hb_000953_160 Hb_006590_030--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_006590_030--Hb_003910_030 Hb_061641_010 Hb_061641_010 Hb_006590_030--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_006590_030--Hb_004077_010 Hb_169511_020 Hb_169511_020 Hb_006590_030--Hb_169511_020 Hb_002411_070 Hb_002411_070 Hb_000373_110--Hb_002411_070 Hb_168031_010 Hb_168031_010 Hb_000373_110--Hb_168031_010 Hb_023536_020 Hb_023536_020 Hb_000373_110--Hb_023536_020 Hb_004125_080 Hb_004125_080 Hb_000373_110--Hb_004125_080 Hb_002116_020 Hb_002116_020 Hb_000373_110--Hb_002116_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.330421 0.0242786 0.507361 0.0154688 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis