Hb_002869_070

Information

Type -
Description -
Location Contig2869: 72951-73454
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002869_070 0.0 - - -
2 Hb_050334_010 0.097535889 - - -
3 Hb_006933_010 0.1109103441 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_154997_010 0.1254120134 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_004124_010 0.1268774001 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_002473_140 0.1297015581 - - -
7 Hb_006157_050 0.1311270824 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_065943_010 0.1322328697 - - -
9 Hb_099723_010 0.1359518893 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_000940_190 0.1372908728 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_106815_010 0.1445711093 - - hypothetical protein, conserved [Eimeria acervulina]
12 Hb_001519_210 0.1524499342 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
13 Hb_032531_010 0.1576867753 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_159938_010 0.1669281187 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_043792_020 0.1853988481 - - Retrotransposon gag protein [Medicago truncatula]
16 Hb_002495_050 0.1928683073 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
17 Hb_001124_170 0.1944910914 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_004212_040 0.2007441251 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_088410_010 0.2026839659 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_123396_010 0.2175963073 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]

Gene co-expression network

sample Hb_002869_070 Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_002869_070--Hb_050334_010 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002869_070--Hb_006157_050 Hb_032531_010 Hb_032531_010 Hb_050334_010--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_050334_010--Hb_001519_210 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010 Hb_006933_010--Hb_004124_010 Hb_006933_010--Hb_154997_010 Hb_002495_050 Hb_002495_050 Hb_006933_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_006933_010--Hb_001124_170 Hb_170973_010 Hb_170973_010 Hb_006933_010--Hb_170973_010 Hb_154997_010--Hb_002495_050 Hb_154997_010--Hb_001124_170 Hb_154997_010--Hb_004124_010 Hb_159938_010 Hb_159938_010 Hb_154997_010--Hb_159938_010 Hb_004124_010--Hb_002495_050 Hb_004124_010--Hb_001124_170 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_088410_010 Hb_088410_010 Hb_002473_140--Hb_088410_010 Hb_002473_140--Hb_159938_010 Hb_002473_140--Hb_050334_010 Hb_002473_140--Hb_001519_210 Hb_002473_140--Hb_154997_010 Hb_006157_050--Hb_065943_010 Hb_006157_050--Hb_099723_010 Hb_006157_050--Hb_000940_190 Hb_006157_050--Hb_032531_010 Hb_006157_050--Hb_050334_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.395294 0.126437 0.8598

CAGE analysis