Hb_002869_090

Information

Type -
Description -
Location Contig2869: 113155-123169
Sequence    

Annotation

kegg
ID cit:102616556
description dirigent protein 23-like
nr
ID XP_012076044.1
description PREDICTED: dirigent protein 22-like [Jatropha curcas]
swissprot
ID Q9C523
description Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1
trembl
ID A0A067KQ98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12758 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002869_090 0.0 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
2 Hb_000659_050 0.042683936 - - PREDICTED: basic blue protein-like [Jatropha curcas]
3 Hb_002616_020 0.0580304703 - - PREDICTED: peroxidase 3 [Jatropha curcas]
4 Hb_000327_100 0.0784899898 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
5 Hb_000352_360 0.0811008675 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
6 Hb_027400_020 0.0834617263 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
7 Hb_000561_040 0.0841323606 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
8 Hb_000344_030 0.0845534389 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
9 Hb_000076_280 0.0907016146 - - PREDICTED: pectinesterase-like [Populus euphratica]
10 Hb_000910_030 0.0910636673 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001675_020 0.0933773941 - - -
12 Hb_003607_090 0.093555431 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
13 Hb_000419_140 0.0940258312 - - Aquaporin PIP2.1, putative [Ricinus communis]
14 Hb_000163_170 0.1050700147 - - -
15 Hb_000069_150 0.1105450179 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
16 Hb_001257_140 0.1107513968 - - Gb:AAF02129.1, putative [Theobroma cacao]
17 Hb_003849_170 0.1115181116 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
18 Hb_002007_330 0.1123423311 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
19 Hb_008731_010 0.1124527332 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
20 Hb_000389_100 0.1126830402 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]

Gene co-expression network

sample Hb_002869_090 Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_002869_090--Hb_000659_050 Hb_002616_020 Hb_002616_020 Hb_002869_090--Hb_002616_020 Hb_000327_100 Hb_000327_100 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_000910_030 Hb_000910_030 Hb_000659_050--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_000659_050--Hb_000344_030 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_000659_050--Hb_002616_020 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_000419_140 Hb_000419_140 Hb_002616_020--Hb_000419_140 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170 Hb_000327_100--Hb_001675_020 Hb_000327_100--Hb_000352_360 Hb_001856_260 Hb_001856_260 Hb_000327_100--Hb_001856_260 Hb_000477_020 Hb_000477_020 Hb_000327_100--Hb_000477_020 Hb_001257_140 Hb_001257_140 Hb_000352_360--Hb_001257_140 Hb_170077_020 Hb_170077_020 Hb_000352_360--Hb_170077_020 Hb_000352_360--Hb_003849_170 Hb_027400_020--Hb_000076_280 Hb_027400_020--Hb_000419_140 Hb_001769_070 Hb_001769_070 Hb_027400_020--Hb_001769_070 Hb_000329_010 Hb_000329_010 Hb_027400_020--Hb_000329_010 Hb_000389_100 Hb_000389_100 Hb_000561_040--Hb_000389_100 Hb_000561_040--Hb_000659_050 Hb_120357_010 Hb_120357_010 Hb_000561_040--Hb_120357_010 Hb_000561_040--Hb_027400_020 Hb_049438_020 Hb_049438_020 Hb_000561_040--Hb_049438_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0804068 3.0398 5.61881 45.8724 0.0188377 0.0216738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0668963 9.37847 8.70293

CAGE analysis