Hb_002870_050

Information

Type -
Description -
Location Contig2870: 85193-91025
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002870_050 0.0 - - -
2 Hb_002374_130 0.1300006675 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
3 Hb_175748_010 0.1617483881 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_028487_090 0.2527806255 - - -
5 Hb_042795_010 0.2884161893 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_053575_010 0.2884287756 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_003401_040 0.2885231325 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_011114_050 0.2886693953 - - -
9 Hb_117252_010 0.288728479 - - hypothetical protein [Pseudomonas tolaasii]
10 Hb_013874_010 0.2887916917 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_017279_030 0.2889764799 - - -
12 Hb_028105_020 0.2898591854 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_162933_010 0.2899758226 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_003463_040 0.2902292548 - - -
15 Hb_003694_070 0.2907424591 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_007111_020 0.291274787 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
17 Hb_024128_010 0.2916651239 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_139518_020 0.2919681176 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_002417_040 0.2921284273 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_165958_010 0.2921921091 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002870_050 Hb_002870_050 Hb_002374_130 Hb_002374_130 Hb_002870_050--Hb_002374_130 Hb_175748_010 Hb_175748_010 Hb_002870_050--Hb_175748_010 Hb_028487_090 Hb_028487_090 Hb_002870_050--Hb_028487_090 Hb_042795_010 Hb_042795_010 Hb_002870_050--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_002870_050--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_002870_050--Hb_003401_040 Hb_002374_130--Hb_028487_090 Hb_002374_130--Hb_175748_010 Hb_000676_210 Hb_000676_210 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_004730_030 Hb_004730_030 Hb_002374_130--Hb_004730_030 Hb_007924_040 Hb_007924_040 Hb_175748_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_175748_010--Hb_003683_100 Hb_000474_020 Hb_000474_020 Hb_175748_010--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_175748_010--Hb_001072_060 Hb_097969_010 Hb_097969_010 Hb_028487_090--Hb_097969_010 Hb_028487_090--Hb_175748_010 Hb_003938_040 Hb_003938_040 Hb_028487_090--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_028487_090--Hb_007108_060 Hb_042795_010--Hb_053575_010 Hb_117252_010 Hb_117252_010 Hb_042795_010--Hb_117252_010 Hb_042795_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_042795_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_042795_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_053575_010--Hb_117252_010 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0839863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0598023 0 0 0.237815

CAGE analysis