Hb_002871_040

Information

Type -
Description -
Location Contig2871: 93916-100140
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21820g
description POPTRDRAFT_555276; ENOYL-ACP REDUCTASE 1 family protein
nr
ID XP_011025228.1
description PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
swissprot
ID Q9SLA8
description Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Arabidopsis thaliana GN=MOD1 PE=1 SV=1
trembl
ID B9GYV3
description ENOYL-ACP REDUCTASE 1 family protein OS=Populus trichocarpa GN=POPTR_0003s21820g PE=4 SV=1
Gene Ontology
ID GO:0004318
description enoyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29939: 94032-100151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_040 0.0 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
2 Hb_003835_110 0.0670144906 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
3 Hb_017193_010 0.0769086226 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
4 Hb_011381_040 0.0829369185 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
5 Hb_000620_020 0.0991297916 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
6 Hb_002627_040 0.1007072641 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
7 Hb_000579_080 0.103048903 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
8 Hb_006588_190 0.1034213279 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
9 Hb_007217_010 0.1034798473 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
10 Hb_005332_080 0.1043449301 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
11 Hb_000926_060 0.1063690227 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001799_160 0.1065734197 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000331_570 0.1071971726 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
14 Hb_002027_320 0.1085382346 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
15 Hb_001102_050 0.108937174 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
16 Hb_001102_070 0.1091463719 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
17 Hb_005665_090 0.1098488871 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
18 Hb_006438_020 0.1128281259 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
19 Hb_007426_220 0.1140165309 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
20 Hb_061256_010 0.1148721488 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_040 Hb_002871_040 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_003835_110--Hb_011381_040 Hb_019654_050 Hb_019654_050 Hb_003835_110--Hb_019654_050 Hb_002027_320 Hb_002027_320 Hb_003835_110--Hb_002027_320 Hb_006588_190 Hb_006588_190 Hb_003835_110--Hb_006588_190 Hb_003835_110--Hb_017193_010 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_101334_020 Hb_101334_020 Hb_017193_010--Hb_101334_020 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_017193_010--Hb_000579_080 Hb_011381_040--Hb_006588_190 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_011381_040--Hb_002027_320 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_000620_020--Hb_101334_020 Hb_002783_190 Hb_002783_190 Hb_000620_020--Hb_002783_190 Hb_006438_020 Hb_006438_020 Hb_000620_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_000620_020--Hb_007426_220 Hb_003680_220 Hb_003680_220 Hb_002627_040--Hb_003680_220 Hb_008725_270 Hb_008725_270 Hb_002627_040--Hb_008725_270 Hb_002687_160 Hb_002687_160 Hb_002627_040--Hb_002687_160 Hb_000025_540 Hb_000025_540 Hb_002627_040--Hb_000025_540 Hb_138585_030 Hb_138585_030 Hb_002627_040--Hb_138585_030 Hb_070624_010 Hb_070624_010 Hb_002627_040--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92701 7.56527 35.7484 13.012 5.90561 4.75445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.1476 6.40277 8.06534 10.1234 16.6611

CAGE analysis