Hb_002871_130

Information

Type -
Description -
Location Contig2871: 232907-235635
Sequence    

Annotation

kegg
ID rcu:RCOM_0565760
description Non-structural maintenance of chromosome element, putative
nr
ID XP_012072725.1
description PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
swissprot
ID Q9C689
description Non-structural maintenance of chromosomes element 4 homolog A OS=Arabidopsis thaliana GN=NSE4A PE=2 SV=1
trembl
ID A0A067KNP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06848 PE=4 SV=1
Gene Ontology
ID GO:0005634
description non-structural maintenance of chromosomes element 4 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29949: 232986-235537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_130 0.0 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
2 Hb_004007_130 0.0894996835 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
3 Hb_004531_080 0.1036993599 - - hypothetical protein RCOM_1491960 [Ricinus communis]
4 Hb_011861_040 0.1093287733 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
5 Hb_002284_260 0.1105239793 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
6 Hb_093458_020 0.1116243045 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
7 Hb_000483_080 0.1224977588 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
8 Hb_000120_300 0.1233027836 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
9 Hb_007943_180 0.1290153363 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
10 Hb_001999_160 0.1291619628 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
11 Hb_001123_310 0.133192639 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
12 Hb_003360_010 0.1339741185 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
13 Hb_024682_030 0.1379014352 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
14 Hb_006970_130 0.1385006057 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
15 Hb_124677_050 0.1391478557 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000343_020 0.1392971503 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
17 Hb_000954_040 0.1407650633 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
18 Hb_001476_130 0.1412137589 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
19 Hb_000088_240 0.1419999396 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_000077_110 0.144913363 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_130 Hb_002871_130 Hb_004007_130 Hb_004007_130 Hb_002871_130--Hb_004007_130 Hb_004531_080 Hb_004531_080 Hb_002871_130--Hb_004531_080 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_002284_260 Hb_002284_260 Hb_002871_130--Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002871_130--Hb_093458_020 Hb_000483_080 Hb_000483_080 Hb_002871_130--Hb_000483_080 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_004007_130--Hb_004531_080 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_004531_080--Hb_000483_080 Hb_000954_040 Hb_000954_040 Hb_011861_040--Hb_000954_040 Hb_000260_670 Hb_000260_670 Hb_011861_040--Hb_000260_670 Hb_001649_050 Hb_001649_050 Hb_011861_040--Hb_001649_050 Hb_011861_040--Hb_003360_010 Hb_080147_070 Hb_080147_070 Hb_011861_040--Hb_080147_070 Hb_002284_260--Hb_093458_020 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_002284_260--Hb_003360_010 Hb_000077_110 Hb_000077_110 Hb_002284_260--Hb_000077_110 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_000003_060 Hb_000003_060 Hb_093458_020--Hb_000003_060 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_000483_080--Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_000483_080--Hb_000120_300 Hb_000483_080--Hb_000077_110 Hb_000483_080--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.50066 1.06101 12.104 6.06354 0.216192 0.140336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.314949 0.371667 0.139618 3.96642 2.22828

CAGE analysis