Hb_002871_140

Information

Type -
Description -
Location Contig2871: 242480-258782
Sequence    

Annotation

kegg
ID rcu:RCOM_0565640
description protein with unknown function
nr
ID KDP37706.1
description hypothetical protein JCGZ_06847 [Jatropha curcas]
swissprot
ID Q5E9V4
description Protein RRNAD1 OS=Bos taurus GN=RRNAD1 PE=2 SV=1
trembl
ID A0A067KND7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06847 PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein rrnad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29950: 242595-245139 , PASA_asmbl_29951: 246208-248540 , PASA_asmbl_29952: 249294-249470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_140 0.0 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
2 Hb_000903_010 0.0808988111 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
3 Hb_000154_050 0.0817214628 - - CMP-sialic acid transporter, putative [Ricinus communis]
4 Hb_002749_080 0.0862947037 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005064_010 0.0872231811 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
6 Hb_002837_040 0.0883382717 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_033642_040 0.0889470701 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
8 Hb_000116_190 0.0948151843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000645_070 0.0971107076 - - aldehyde dehydrogenase, putative [Ricinus communis]
10 Hb_004064_040 0.0975809742 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
11 Hb_000098_240 0.0983078131 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
12 Hb_001002_060 0.0990765758 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
13 Hb_000820_150 0.0995403799 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
14 Hb_000071_150 0.0998935907 - - Stearoy-ACP desaturase [Ricinus communis]
15 Hb_000347_040 0.1017421229 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
16 Hb_000787_060 0.104122834 - - thioredoxin domain-containing protein, putative [Ricinus communis]
17 Hb_002774_190 0.1080231899 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
18 Hb_004096_060 0.1081503866 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
19 Hb_134429_010 0.1098578757 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005895_010 0.1101883465 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_140 Hb_002871_140 Hb_000903_010 Hb_000903_010 Hb_002871_140--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002871_140--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002871_140--Hb_002749_080 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002837_040 Hb_002837_040 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_000903_010--Hb_002837_040 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_000903_010--Hb_002749_080 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_000154_050--Hb_005064_010 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_000154_050--Hb_002837_040 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_002749_080--Hb_002837_040 Hb_002749_080--Hb_000787_060 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_005064_010--Hb_004064_040 Hb_005064_010--Hb_001002_060 Hb_001227_120 Hb_001227_120 Hb_005064_010--Hb_001227_120 Hb_003540_050 Hb_003540_050 Hb_005064_010--Hb_003540_050 Hb_000160_070 Hb_000160_070 Hb_005064_010--Hb_000160_070 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_002837_040--Hb_006588_160 Hb_004096_060 Hb_004096_060 Hb_033642_040--Hb_004096_060 Hb_000098_240 Hb_000098_240 Hb_033642_040--Hb_000098_240 Hb_000175_410 Hb_000175_410 Hb_033642_040--Hb_000175_410 Hb_000820_150 Hb_000820_150 Hb_033642_040--Hb_000820_150 Hb_016777_040 Hb_016777_040 Hb_033642_040--Hb_016777_040 Hb_008397_010 Hb_008397_010 Hb_033642_040--Hb_008397_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22018 0.917724 3.02743 2.67524 1.43827 2.07313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.862102 0.836526 0.553678 1.6409 2.51413

CAGE analysis