Hb_002871_190

Information

Type -
Description -
Location Contig2871: 301667-309172
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42960g
description hypothetical protein
nr
ID XP_012065736.1
description PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L830
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26558 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29960: 301637-308554 , PASA_asmbl_29963: 303144-303570
cDNA
(Sanger)
(ID:Location)		 036_H04.ab1: 302531-308554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_190 0.0 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
2 Hb_003728_060 0.0721606243 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
3 Hb_026889_030 0.0759744893 - - protein with unknown function [Ricinus communis]
4 Hb_050514_010 0.0792510267 - - hypothetical protein 29 [Hevea brasiliensis]
5 Hb_010361_010 0.0793667539 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
6 Hb_002600_090 0.080018735 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000827_050 0.0801456278 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_000174_030 0.0808807727 - - hypothetical protein RCOM_1077370 [Ricinus communis]
9 Hb_000260_030 0.0840518527 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
10 Hb_001711_020 0.0855971307 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
11 Hb_001604_060 0.0856213965 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
12 Hb_000599_250 0.0869343681 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
13 Hb_028872_080 0.0889685913 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
14 Hb_012799_170 0.0901427204 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
15 Hb_001322_110 0.0902839717 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004889_020 0.0908700857 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
17 Hb_002799_110 0.0916257195 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
18 Hb_001268_420 0.0919386064 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
19 Hb_001489_080 0.0923383754 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_002540_080 0.0929626843 - - cysteine-type peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002871_190 Hb_002871_190 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_026889_030 Hb_026889_030 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_003728_060--Hb_000375_350 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_003728_060--Hb_026889_030 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_026889_030--Hb_010361_010 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390 Hb_050514_010--Hb_000260_030 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_000329_200 Hb_000329_200 Hb_010361_010--Hb_000329_200 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_024650_070 Hb_024650_070 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_002600_090--Hb_000599_250 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_000827_050--Hb_004109_170 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35479 2.08564 8.41955 5.71707 3.57885 5.23535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38653 9.07523 9.58668 4.00133 7.18373

CAGE analysis