Hb_002872_020

Information

Type -
Description -
Location Contig2872: 25641-34088
Sequence    

Annotation

kegg
ID rcu:RCOM_1353350
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_002519449.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9UNX4
description WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1
trembl
ID B9S0D0
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1353350 PE=4 SV=1
Gene Ontology
ID GO:0043170
description wd repeat-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002872_020 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_000429_200 0.1033728749 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
3 Hb_001136_100 0.1066864586 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
4 Hb_055590_010 0.1088546321 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003506_080 0.117932575 - - dipeptidyl peptidase IV, putative [Ricinus communis]
6 Hb_000599_110 0.1200051435 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001136_090 0.1222466607 - - Protein PNS1, putative [Ricinus communis]
8 Hb_002079_010 0.1252351201 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
9 Hb_166222_010 0.1257168146 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
10 Hb_004600_040 0.1268630435 - - -
11 Hb_003682_060 0.1274894236 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
12 Hb_007447_010 0.1284286933 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
13 Hb_005237_010 0.128810987 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
14 Hb_001199_020 0.1293231283 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
15 Hb_007044_080 0.1308062628 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
16 Hb_003001_150 0.1308411095 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000160_170 0.13111047 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
18 Hb_003464_110 0.1312128077 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
19 Hb_000179_020 0.1316423454 - - amidase, putative [Ricinus communis]
20 Hb_000358_150 0.131950731 - - hypothetical protein VITISV_012309 [Vitis vinifera]

Gene co-expression network

sample Hb_002872_020 Hb_002872_020 Hb_000429_200 Hb_000429_200 Hb_002872_020--Hb_000429_200 Hb_001136_100 Hb_001136_100 Hb_002872_020--Hb_001136_100 Hb_055590_010 Hb_055590_010 Hb_002872_020--Hb_055590_010 Hb_003506_080 Hb_003506_080 Hb_002872_020--Hb_003506_080 Hb_000599_110 Hb_000599_110 Hb_002872_020--Hb_000599_110 Hb_001136_090 Hb_001136_090 Hb_002872_020--Hb_001136_090 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000358_250 Hb_000358_250 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_001136_100--Hb_001136_090 Hb_002367_130 Hb_002367_130 Hb_001136_100--Hb_002367_130 Hb_012132_030 Hb_012132_030 Hb_001136_100--Hb_012132_030 Hb_003001_150 Hb_003001_150 Hb_001136_100--Hb_003001_150 Hb_007304_110 Hb_007304_110 Hb_001136_100--Hb_007304_110 Hb_000207_310 Hb_000207_310 Hb_001136_100--Hb_000207_310 Hb_003464_110 Hb_003464_110 Hb_055590_010--Hb_003464_110 Hb_000659_030 Hb_000659_030 Hb_055590_010--Hb_000659_030 Hb_000322_050 Hb_000322_050 Hb_055590_010--Hb_000322_050 Hb_003728_020 Hb_003728_020 Hb_055590_010--Hb_003728_020 Hb_000160_170 Hb_000160_170 Hb_055590_010--Hb_000160_170 Hb_008406_160 Hb_008406_160 Hb_055590_010--Hb_008406_160 Hb_007108_030 Hb_007108_030 Hb_003506_080--Hb_007108_030 Hb_000977_180 Hb_000977_180 Hb_003506_080--Hb_000977_180 Hb_009620_040 Hb_009620_040 Hb_003506_080--Hb_009620_040 Hb_000815_210 Hb_000815_210 Hb_003506_080--Hb_000815_210 Hb_001866_110 Hb_001866_110 Hb_003506_080--Hb_001866_110 Hb_002079_010 Hb_002079_010 Hb_003506_080--Hb_002079_010 Hb_000085_060 Hb_000085_060 Hb_000599_110--Hb_000085_060 Hb_000107_620 Hb_000107_620 Hb_000599_110--Hb_000107_620 Hb_063090_010 Hb_063090_010 Hb_000599_110--Hb_063090_010 Hb_002963_020 Hb_002963_020 Hb_000599_110--Hb_002963_020 Hb_006692_030 Hb_006692_030 Hb_000599_110--Hb_006692_030 Hb_000486_010 Hb_000486_010 Hb_000599_110--Hb_000486_010 Hb_000041_280 Hb_000041_280 Hb_001136_090--Hb_000041_280 Hb_001136_090--Hb_002367_130 Hb_001136_090--Hb_012132_030 Hb_001502_060 Hb_001502_060 Hb_001136_090--Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001136_090--Hb_000072_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44013 0.522128 0.381686 0.340373 2.99299 1.48601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63202 1.19763 1.34689 1.20358 1.07264

CAGE analysis