Hb_002872_040

Information

Type -
Description -
Location Contig2872: 44846-56636
Sequence    

Annotation

kegg
ID rcu:RCOM_0481440
description pumilio, putative
nr
ID XP_002530940.1
description pumilio, putative [Ricinus communis]
swissprot
ID Q9SS47
description Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
trembl
ID B9SY71
description Pumilio, putative OS=Ricinus communis GN=RCOM_0481440 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29970: 44931-49729 , PASA_asmbl_29971: 45941-46291 , PASA_asmbl_29972: 49839-55232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002872_040 0.0 - - pumilio, putative [Ricinus communis]
2 Hb_000243_250 0.0425136571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
3 Hb_000003_190 0.0570300973 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
4 Hb_001080_230 0.0637049164 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
5 Hb_000092_020 0.0647012294 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
6 Hb_001638_270 0.0726008094 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
7 Hb_000574_540 0.0726028428 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000395_130 0.0747392728 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
9 Hb_011491_010 0.0753869466 - - Protein YME1, putative [Ricinus communis]
10 Hb_003470_080 0.0772626939 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
11 Hb_002890_290 0.0790840932 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
12 Hb_012779_090 0.0801344659 - - PREDICTED: lipase member N [Jatropha curcas]
13 Hb_001114_140 0.0825702934 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
14 Hb_000345_140 0.0841941519 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
15 Hb_002798_070 0.0844811572 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
16 Hb_001104_190 0.085675563 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
17 Hb_000329_370 0.0860348922 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
18 Hb_002043_140 0.0873427571 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
19 Hb_008959_020 0.0880853546 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
20 Hb_007765_110 0.0892223799 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_002872_040 Hb_002872_040 Hb_000243_250 Hb_000243_250 Hb_002872_040--Hb_000243_250 Hb_000003_190 Hb_000003_190 Hb_002872_040--Hb_000003_190 Hb_001080_230 Hb_001080_230 Hb_002872_040--Hb_001080_230 Hb_000092_020 Hb_000092_020 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_000574_540 Hb_000574_540 Hb_002872_040--Hb_000574_540 Hb_002798_070 Hb_002798_070 Hb_000243_250--Hb_002798_070 Hb_012779_090 Hb_012779_090 Hb_000243_250--Hb_012779_090 Hb_011491_010 Hb_011491_010 Hb_000243_250--Hb_011491_010 Hb_012055_060 Hb_012055_060 Hb_000243_250--Hb_012055_060 Hb_000243_250--Hb_000092_020 Hb_000003_190--Hb_001080_230 Hb_000003_190--Hb_000092_020 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_000395_130 Hb_000395_130 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_001080_230--Hb_000092_020 Hb_001080_230--Hb_000395_130 Hb_001080_230--Hb_003470_080 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000092_020--Hb_000395_130 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000092_020--Hb_000574_540 Hb_000092_020--Hb_011491_010 Hb_167498_010 Hb_167498_010 Hb_001638_270--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_001638_270--Hb_003158_010 Hb_001638_270--Hb_000395_130 Hb_001638_270--Hb_000003_190 Hb_001638_270--Hb_000092_020 Hb_001638_270--Hb_000574_540 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_000574_540--Hb_001080_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6648 22.2196 7.89161 7.00142 14.7076 9.71912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3255 9.80628 10.6058 11.4253 11.1483

CAGE analysis