Hb_002874_100

Information

Type -
Description -
Location Contig2874: 71983-73691
Sequence    

Annotation

kegg
ID rcu:RCOM_0205130
description cytochrome P450, putative (EC:1.14.13.77)
nr
ID XP_002527982.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID I7C6E8
description Beta-amyrin 28-oxidase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SPR3
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0205130 PE=3 SV=1
Gene Ontology
ID GO:0005506
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29986: 72812-73247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_100 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_033153_030 0.0642399564 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
3 Hb_007426_100 0.0671204813 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000363_100 0.0674294752 - - -
5 Hb_001104_290 0.0700908834 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
6 Hb_000445_480 0.0730092816 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003252_030 0.08422894 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_003058_090 0.0929053383 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
9 Hb_002894_020 0.0975948882 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
10 Hb_000269_050 0.1024965356 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
11 Hb_007477_020 0.1038369663 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
12 Hb_001529_010 0.1058190656 - - -
13 Hb_000194_030 0.1132762852 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
14 Hb_005373_030 0.1159999071 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000381_140 0.1172936643 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
16 Hb_000027_010 0.1182133749 - - -
17 Hb_011689_090 0.119291141 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
18 Hb_116679_010 0.1218507411 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
19 Hb_000203_110 0.1335539411 - - -
20 Hb_000296_030 0.1340402078 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_100 Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_002874_100--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002874_100--Hb_007426_100 Hb_000363_100 Hb_000363_100 Hb_002874_100--Hb_000363_100 Hb_001104_290 Hb_001104_290 Hb_002874_100--Hb_001104_290 Hb_000445_480 Hb_000445_480 Hb_002874_100--Hb_000445_480 Hb_003252_030 Hb_003252_030 Hb_002874_100--Hb_003252_030 Hb_033153_030--Hb_000445_480 Hb_001529_010 Hb_001529_010 Hb_033153_030--Hb_001529_010 Hb_033153_030--Hb_007426_100 Hb_002894_020 Hb_002894_020 Hb_033153_030--Hb_002894_020 Hb_005373_030 Hb_005373_030 Hb_033153_030--Hb_005373_030 Hb_000194_030 Hb_000194_030 Hb_007426_100--Hb_000194_030 Hb_007426_100--Hb_000445_480 Hb_007426_100--Hb_001529_010 Hb_007426_100--Hb_002894_020 Hb_000363_100--Hb_001104_290 Hb_000363_100--Hb_003252_030 Hb_011689_090 Hb_011689_090 Hb_000363_100--Hb_011689_090 Hb_000363_100--Hb_000445_480 Hb_116679_010 Hb_116679_010 Hb_000363_100--Hb_116679_010 Hb_001104_290--Hb_003252_030 Hb_001104_290--Hb_011689_090 Hb_003747_080 Hb_003747_080 Hb_001104_290--Hb_003747_080 Hb_001104_290--Hb_116679_010 Hb_000445_480--Hb_002894_020 Hb_000445_480--Hb_001529_010 Hb_003252_030--Hb_011689_090 Hb_003252_030--Hb_003747_080 Hb_000203_110 Hb_000203_110 Hb_003252_030--Hb_000203_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.26066 0.172155 4.16847 0 0.01426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.152061 0

CAGE analysis