Hb_002874_110

Information

Type -
Description -
Location Contig2874: 75095-89879
Sequence    

Annotation

kegg
ID rcu:RCOM_0205150
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_012076305.1
description PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
swissprot
ID P73627
description Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1
trembl
ID A0A067KNN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06995 PE=4 SV=1
Gene Ontology
ID GO:0016772
description abc1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29987: 75161-89889 , PASA_asmbl_29988: 86037-86406 , PASA_asmbl_29991: 82320-82586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_110 0.0 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
2 Hb_002749_060 0.0568860203 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
3 Hb_000803_320 0.0575524159 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
4 Hb_073171_070 0.061014001 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
5 Hb_006663_060 0.0644040544 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
6 Hb_011819_020 0.0650180435 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
7 Hb_009288_020 0.0664270094 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
8 Hb_000359_210 0.066862158 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000890_070 0.0677489741 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_003040_050 0.0681649339 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
11 Hb_003280_020 0.069270321 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
12 Hb_027445_020 0.069393587 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
13 Hb_126976_010 0.0706487274 - - -
14 Hb_004679_030 0.0721064711 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
15 Hb_003340_010 0.0721462285 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
16 Hb_000317_100 0.0727515179 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
17 Hb_004048_120 0.0737800841 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
18 Hb_006839_010 0.0745271899 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
19 Hb_000773_040 0.0747513888 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
20 Hb_012518_070 0.0748666367 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_110 Hb_002874_110 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_000803_320 Hb_000803_320 Hb_002874_110--Hb_000803_320 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_009288_020 Hb_009288_020 Hb_002874_110--Hb_009288_020 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_000803_320--Hb_006663_060 Hb_003040_050 Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_073171_070--Hb_006663_060 Hb_073171_070--Hb_009288_020 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_006663_060--Hb_009288_020 Hb_006663_060--Hb_003040_050 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_009288_020--Hb_003040_050 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.33297 17.585 14.8929 26.5678 14.0372 14.0542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7496 9.82159 13.8952 23.0368 31.8572

CAGE analysis