Hb_002874_120

Information

Type -
Description -
Location Contig2874: 90726-91271
Sequence    

Annotation

kegg
ID rcu:RCOM_0205160
description calcium binding protein/cast, putative
nr
ID XP_012077495.1
description PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
swissprot
ID Q9SVG9
description Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1
trembl
ID A0A067KEJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29987: 75161-89889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_120 0.0 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
2 Hb_000343_020 0.108308628 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
3 Hb_011849_030 0.1285012152 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002918_220 0.1344406754 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
5 Hb_005568_140 0.1369754489 - - ATP binding protein, putative [Ricinus communis]
6 Hb_027337_010 0.1393053821 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000200_270 0.14079072 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_000506_100 0.1422426935 - - PREDICTED: BTB/POZ domain-containing protein At5g48130 [Jatropha curcas]
9 Hb_033152_060 0.1428434182 - - PREDICTED: phragmoplast orienting kinesin 2 [Jatropha curcas]
10 Hb_002205_160 0.1432558064 - - chalcone isomerase [Hibiscus cannabinus]
11 Hb_004607_020 0.14544678 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_002995_010 0.1496207667 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
13 Hb_007441_290 0.154287451 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
14 Hb_012753_150 0.1547817055 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
15 Hb_001649_050 0.154900674 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
16 Hb_003992_130 0.1576737725 - - unnamed protein product [Vitis vinifera]
17 Hb_039812_010 0.1598656395 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_001761_010 0.1627210977 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
19 Hb_004650_040 0.1630597872 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
20 Hb_002170_060 0.1635430339 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_120 Hb_002874_120 Hb_000343_020 Hb_000343_020 Hb_002874_120--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_002874_120--Hb_011849_030 Hb_002918_220 Hb_002918_220 Hb_002874_120--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_002874_120--Hb_005568_140 Hb_027337_010 Hb_027337_010 Hb_002874_120--Hb_027337_010 Hb_000200_270 Hb_000200_270 Hb_002874_120--Hb_000200_270 Hb_009339_040 Hb_009339_040 Hb_000343_020--Hb_009339_040 Hb_002081_060 Hb_002081_060 Hb_000343_020--Hb_002081_060 Hb_004607_020 Hb_004607_020 Hb_000343_020--Hb_004607_020 Hb_000343_020--Hb_011849_030 Hb_033152_060 Hb_033152_060 Hb_000343_020--Hb_033152_060 Hb_001159_220 Hb_001159_220 Hb_011849_030--Hb_001159_220 Hb_001649_050 Hb_001649_050 Hb_011849_030--Hb_001649_050 Hb_005306_030 Hb_005306_030 Hb_011849_030--Hb_005306_030 Hb_011849_030--Hb_004607_020 Hb_011849_030--Hb_027337_010 Hb_002995_010 Hb_002995_010 Hb_011849_030--Hb_002995_010 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_004422_030 Hb_004422_030 Hb_002918_220--Hb_004422_030 Hb_001571_080 Hb_001571_080 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_010267_020 Hb_010267_020 Hb_002918_220--Hb_010267_020 Hb_005568_140--Hb_004109_100 Hb_005568_140--Hb_001571_080 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_005568_140--Hb_010267_020 Hb_005568_140--Hb_004422_030 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_003626_020 Hb_003626_020 Hb_027337_010--Hb_003626_020 Hb_027337_010--Hb_002918_220 Hb_027337_010--Hb_001571_080 Hb_027337_010--Hb_005568_140 Hb_000200_270--Hb_010267_020 Hb_000856_230 Hb_000856_230 Hb_000200_270--Hb_000856_230 Hb_000200_270--Hb_002918_220 Hb_005695_070 Hb_005695_070 Hb_000200_270--Hb_005695_070 Hb_002311_500 Hb_002311_500 Hb_000200_270--Hb_002311_500 Hb_009421_090 Hb_009421_090 Hb_000200_270--Hb_009421_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100017 0.291235 2.05261 0.616385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.264614 0.174375

CAGE analysis