Hb_002874_140

Information

Type -
Description -
Location Contig2874: 113433-115318
Sequence    

Annotation

kegg
ID pmum:103321533
description 26S proteasome non-ATPase regulatory subunit 11 homolog
nr
ID XP_008221569.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
swissprot
ID Q9LP45
description 26S proteasome non-ATPase regulatory subunit 11 homolog OS=Arabidopsis thaliana GN=RPN6 PE=1 SV=1
trembl
ID A5BPX8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021756 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 26s proteasome non-atpase regulatory subunit 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29996: 116034-117721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_140 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
2 Hb_008191_010 0.2580653425 - - -
3 Hb_111854_010 0.2884185469 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_000340_540 0.3099445922 - - PREDICTED: peroxidase 39-like [Jatropha curcas]
5 Hb_187024_090 0.3161256846 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_008008_020 0.3170467715 - - -
7 Hb_002996_020 0.3260349575 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_067730_010 0.3271983726 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
9 Hb_012286_080 0.3342094884 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
10 Hb_004678_070 0.3433179522 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_097981_010 0.3434661873 - - -
12 Hb_003605_010 0.3531094503 - - -
13 Hb_002374_130 0.355134318 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
14 Hb_001758_030 0.3672630904 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
15 Hb_002870_050 0.3700946612 - - -
16 Hb_028487_090 0.3752856883 - - -
17 Hb_000340_120 0.3828788042 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
18 Hb_004109_360 0.3832793505 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
19 Hb_187951_010 0.3837809262 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_006494_010 0.3838500707 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_002874_140 Hb_002874_140 Hb_008191_010 Hb_008191_010 Hb_002874_140--Hb_008191_010 Hb_111854_010 Hb_111854_010 Hb_002874_140--Hb_111854_010 Hb_000340_540 Hb_000340_540 Hb_002874_140--Hb_000340_540 Hb_187024_090 Hb_187024_090 Hb_002874_140--Hb_187024_090 Hb_008008_020 Hb_008008_020 Hb_002874_140--Hb_008008_020 Hb_002996_020 Hb_002996_020 Hb_002874_140--Hb_002996_020 Hb_005496_100 Hb_005496_100 Hb_008191_010--Hb_005496_100 Hb_161207_010 Hb_161207_010 Hb_008191_010--Hb_161207_010 Hb_000016_120 Hb_000016_120 Hb_008191_010--Hb_000016_120 Hb_112046_010 Hb_112046_010 Hb_008191_010--Hb_112046_010 Hb_012938_010 Hb_012938_010 Hb_008191_010--Hb_012938_010 Hb_111854_010--Hb_008008_020 Hb_004511_060 Hb_004511_060 Hb_111854_010--Hb_004511_060 Hb_093912_010 Hb_093912_010 Hb_111854_010--Hb_093912_010 Hb_113541_010 Hb_113541_010 Hb_111854_010--Hb_113541_010 Hb_000976_200 Hb_000976_200 Hb_111854_010--Hb_000976_200 Hb_007970_040 Hb_007970_040 Hb_111854_010--Hb_007970_040 Hb_000340_540--Hb_004511_060 Hb_000340_540--Hb_000976_200 Hb_000340_540--Hb_093912_010 Hb_000060_070 Hb_000060_070 Hb_000340_540--Hb_000060_070 Hb_000340_540--Hb_113541_010 Hb_162086_010 Hb_162086_010 Hb_000340_540--Hb_162086_010 Hb_000965_010 Hb_000965_010 Hb_187024_090--Hb_000965_010 Hb_000685_090 Hb_000685_090 Hb_187024_090--Hb_000685_090 Hb_187024_090--Hb_008008_020 Hb_022793_010 Hb_022793_010 Hb_187024_090--Hb_022793_010 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_000084_170 Hb_000084_170 Hb_187024_090--Hb_000084_170 Hb_012286_080 Hb_012286_080 Hb_008008_020--Hb_012286_080 Hb_008008_020--Hb_162086_010 Hb_166631_010 Hb_166631_010 Hb_008008_020--Hb_166631_010 Hb_008008_020--Hb_000060_070 Hb_003605_010 Hb_003605_010 Hb_002996_020--Hb_003605_010 Hb_002996_020--Hb_111854_010 Hb_004981_010 Hb_004981_010 Hb_002996_020--Hb_004981_010 Hb_002996_020--Hb_008008_020 Hb_003717_020 Hb_003717_020 Hb_002996_020--Hb_003717_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0328609 0 0.031143 0 0.0410062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0588139 0 0 0.117105

CAGE analysis