Hb_002874_170

Information

Type -
Description -
Location Contig2874: 130134-142646
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03980g
description hypothetical protein
nr
ID XP_012076297.1
description PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
swissprot
ID O23461
description L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1
trembl
ID A0A067KEI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06989 PE=4 SV=1
Gene Ontology
ID GO:0005829
description arabinose kinase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30002: 130368-142580 , PASA_asmbl_30004: 136363-136580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_170 0.0 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
2 Hb_000649_300 0.0894633917 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
3 Hb_172676_010 0.1165097422 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
4 Hb_001951_240 0.1199901498 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_002073_020 0.1264308003 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
6 Hb_019863_060 0.1273884713 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
7 Hb_005496_160 0.1299958901 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
8 Hb_001522_040 0.1385980626 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_187005_010 0.1389997265 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
10 Hb_000008_430 0.1398672328 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
11 Hb_001053_200 0.1401779079 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_002804_010 0.1414880986 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
13 Hb_005539_100 0.1416195669 - - nucleoside transporter, putative [Ricinus communis]
14 Hb_005288_050 0.1418407842 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
15 Hb_061908_020 0.1463669562 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_002154_020 0.146502752 - - protein with unknown function [Ricinus communis]
17 Hb_000175_270 0.1486641601 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
18 Hb_000100_210 0.1487794816 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
19 Hb_172421_010 0.1495414835 - - cysteine protease [Hevea brasiliensis]
20 Hb_000732_230 0.1498662161 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_170 Hb_002874_170 Hb_000649_300 Hb_000649_300 Hb_002874_170--Hb_000649_300 Hb_172676_010 Hb_172676_010 Hb_002874_170--Hb_172676_010 Hb_001951_240 Hb_001951_240 Hb_002874_170--Hb_001951_240 Hb_002073_020 Hb_002073_020 Hb_002874_170--Hb_002073_020 Hb_019863_060 Hb_019863_060 Hb_002874_170--Hb_019863_060 Hb_005496_160 Hb_005496_160 Hb_002874_170--Hb_005496_160 Hb_000649_300--Hb_005496_160 Hb_000649_300--Hb_001951_240 Hb_001053_200 Hb_001053_200 Hb_000649_300--Hb_001053_200 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_000649_300--Hb_002073_020 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_172676_010--Hb_002073_020 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_172676_010--Hb_001951_240 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_001053_200 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_001951_240--Hb_002073_020 Hb_002073_020--Hb_005539_100 Hb_002073_020--Hb_001053_200 Hb_002073_020--Hb_005496_160 Hb_000473_150 Hb_000473_150 Hb_019863_060--Hb_000473_150 Hb_000059_130 Hb_000059_130 Hb_019863_060--Hb_000059_130 Hb_002154_020 Hb_002154_020 Hb_019863_060--Hb_002154_020 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_005496_160--Hb_001053_200 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_005496_160--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33864 22.3618 11.504 7.14289 1.15223 4.31179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.78083 0.57546 0.673226 9.34272 8.4076

CAGE analysis