Hb_002874_180

Information

Type -
Description -
Location Contig2874: 143790-146703
Sequence    

Annotation

kegg
ID fve:101312311
description protein AIG2-like
nr
ID XP_012076293.1
description PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
swissprot
ID P54121
description Protein AIG2 OS=Arabidopsis thaliana GN=AIG2 PE=2 SV=1
trembl
ID A0A067KBA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06988 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30005: 144133-144493 , PASA_asmbl_30006: 143765-146449 , PASA_asmbl_30009: 147250-154552
cDNA
(Sanger)
(ID:Location)		 033_E15.ab1: 143889-146346 , 035_C05.ab1: 147495-154468 , 038_K17.ab1: 147379-154422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_180 0.0 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
2 Hb_001022_030 0.071906124 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
3 Hb_077026_010 0.0722656609 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
4 Hb_000058_130 0.0738636216 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
5 Hb_000003_170 0.0762347973 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
6 Hb_000028_520 0.0767727553 - - hypothetical protein L484_025125 [Morus notabilis]
7 Hb_000003_780 0.0815245576 - - hexokinase [Manihot esculenta]
8 Hb_005162_110 0.0853908077 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
9 Hb_000061_180 0.0854672325 - - exonuclease, putative [Ricinus communis]
10 Hb_004096_240 0.0863662678 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
11 Hb_002284_210 0.0871638026 - - PREDICTED: protein canopy-1 [Jatropha curcas]
12 Hb_000663_020 0.087285678 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001675_300 0.0886934767 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
14 Hb_002316_140 0.0917737906 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
15 Hb_002631_240 0.0918584998 - - JHL17M24.3 [Jatropha curcas]
16 Hb_107879_010 0.0922711349 - - phosphoglycerate mutase, putative [Ricinus communis]
17 Hb_004109_120 0.0937164925 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
18 Hb_003760_030 0.0943922596 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
19 Hb_000890_130 0.0945070942 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
20 Hb_000304_070 0.0959408128 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_002874_180 Hb_002874_180 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_077026_010 Hb_077026_010 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_003728_100 Hb_003728_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020 Hb_000847_080 Hb_000847_080 Hb_077026_010--Hb_000847_080 Hb_021943_080 Hb_021943_080 Hb_077026_010--Hb_021943_080 Hb_000120_210 Hb_000120_210 Hb_077026_010--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_077026_010--Hb_004096_240 Hb_000663_020 Hb_000663_020 Hb_077026_010--Hb_000663_020 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_005162_110 Hb_005162_110 Hb_000003_170--Hb_005162_110 Hb_001703_040 Hb_001703_040 Hb_000003_170--Hb_001703_040 Hb_005946_040 Hb_005946_040 Hb_000003_170--Hb_005946_040 Hb_000163_260 Hb_000163_260 Hb_000003_170--Hb_000163_260 Hb_004109_120 Hb_004109_120 Hb_000003_170--Hb_004109_120 Hb_000028_520--Hb_002157_120 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_000003_780--Hb_005946_040 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.18513 4.88692 18.4545 11.2256 8.16751 7.38491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49352 7.49796 5.64943 4.59967 11.4129

CAGE analysis