Hb_002874_190

Information

Type -
Description -
Location Contig2874: 147208-154546
Sequence    

Annotation

kegg
ID rcu:RCOM_0205360
description proteasome subunit beta type 6,9, putative (EC:3.4.25.1)
nr
ID XP_002527995.1
description proteasome subunit beta type 6,9, putative [Ricinus communis]
swissprot
ID Q8LD27
description Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2
trembl
ID B9SPS6
description Proteasome subunit beta type OS=Ricinus communis GN=RCOM_0205360 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30009: 147250-154552
cDNA
(Sanger)
(ID:Location)		 035_C05.ab1: 147495-154468 , 038_K17.ab1: 147379-154422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_190 0.0 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
2 Hb_003055_120 0.0608845369 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_005539_350 0.0628822679 - - conserved hypothetical protein [Ricinus communis]
4 Hb_165132_010 0.0675170702 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_003687_110 0.0681894643 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
6 Hb_006541_030 0.0682549679 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
7 Hb_000840_030 0.0682594586 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
8 Hb_000085_320 0.0690820285 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
9 Hb_063716_050 0.0693755585 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
10 Hb_101705_030 0.0701287621 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_153112_020 0.0706925645 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
12 Hb_001604_080 0.073095715 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_002864_050 0.0740047579 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
14 Hb_000086_070 0.076672564 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
15 Hb_009773_020 0.0767649198 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
16 Hb_003050_080 0.0795878493 - - 40S ribosomal protein S14, putative [Ricinus communis]
17 Hb_001140_060 0.0796092025 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
18 Hb_004931_090 0.0797434024 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
19 Hb_011794_070 0.0798383221 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
20 Hb_000270_270 0.0809649415 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002874_190 Hb_002874_190 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_000988_080 Hb_000988_080 Hb_003055_120--Hb_000988_080 Hb_003055_120--Hb_003687_110 Hb_012762_050 Hb_012762_050 Hb_003055_120--Hb_012762_050 Hb_003055_120--Hb_005539_350 Hb_011381_100 Hb_011381_100 Hb_003055_120--Hb_011381_100 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_005539_350--Hb_000840_030 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_003687_110--Hb_165132_010 Hb_010180_020 Hb_010180_020 Hb_003687_110--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_003687_110--Hb_001604_080 Hb_003687_110--Hb_002007_060 Hb_002411_170 Hb_002411_170 Hb_003687_110--Hb_002411_170 Hb_006541_030--Hb_007380_070 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_000840_030--Hb_006541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
271.105 88.6115 145.019 158.892 243.202 303.582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
344.637 486.183 368.151 88.6671 85.3813

CAGE analysis