Hb_002874_200

Information

Type -
Description -
Location Contig2874: 160944-162621
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29350g
description hypothetical protein
nr
ID XP_011002963.1
description PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GEZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s29350g PE=4 SV=1
Gene Ontology
ID GO:0005773
description extracellular ligand-gated ion channel protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30010: 161039-161749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_200 0.0 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
2 Hb_000230_410 0.0635441344 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
3 Hb_002388_070 0.0644336691 - - ring finger protein, putative [Ricinus communis]
4 Hb_004032_290 0.0648243111 - - protein binding protein, putative [Ricinus communis]
5 Hb_000395_310 0.0660202135 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_007185_050 0.0728317797 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
7 Hb_001136_040 0.0755188233 - - amino acid transporter, putative [Ricinus communis]
8 Hb_009783_010 0.0780164655 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
9 Hb_000009_280 0.0808731913 - - Calmodulin, putative [Ricinus communis]
10 Hb_036520_030 0.0814450956 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
11 Hb_001898_040 0.0837127984 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000680_060 0.0839665667 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
13 Hb_009785_030 0.0933699457 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
14 Hb_000866_130 0.09415695 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
15 Hb_004020_030 0.0949545932 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
16 Hb_001136_160 0.0958691964 - - catalytic, putative [Ricinus communis]
17 Hb_012132_050 0.098336489 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
18 Hb_002997_150 0.0996683843 - - hypothetical protein RCOM_1406750 [Ricinus communis]
19 Hb_000676_230 0.1010643697 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
20 Hb_003466_010 0.1016248046 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]

Gene co-expression network

sample Hb_002874_200 Hb_002874_200 Hb_000230_410 Hb_000230_410 Hb_002874_200--Hb_000230_410 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_004032_290 Hb_004032_290 Hb_002874_200--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_002874_200--Hb_000395_310 Hb_007185_050 Hb_007185_050 Hb_002874_200--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_002874_200--Hb_001136_040 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_000230_410--Hb_007185_050 Hb_000230_410--Hb_001136_040 Hb_002388_070--Hb_000395_310 Hb_002997_150 Hb_002997_150 Hb_002388_070--Hb_002997_150 Hb_002388_070--Hb_004032_290 Hb_004020_030 Hb_004020_030 Hb_002388_070--Hb_004020_030 Hb_002388_070--Hb_000230_410 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_004032_290--Hb_000395_310 Hb_000395_310--Hb_000230_410 Hb_003466_010 Hb_003466_010 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_007185_050--Hb_001136_040 Hb_007185_050--Hb_000009_280 Hb_007185_050--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_007185_050--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_001136_040--Hb_009783_010 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_001136_040--Hb_000009_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0765564 0.833045 2.05463 7.17657 0 0.0280354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.159762 2.71898

CAGE analysis