Hb_002875_050

Information

Type -
Description -
Location Contig2875: 63469-64701
Sequence    

Annotation

kegg
ID rcu:RCOM_0144270
description hypothetical protein
nr
ID XP_012083137.1
description PREDICTED: proteoglycan 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14212 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30014: 63231-63488 , PASA_asmbl_30015: 63819-64254 , PASA_asmbl_30016: 64526-64681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002875_050 0.0 - - PREDICTED: proteoglycan 4 [Jatropha curcas]
2 Hb_001491_030 0.2121726933 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
3 Hb_000421_130 0.2150386757 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
4 Hb_000058_110 0.2167807065 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
5 Hb_004306_040 0.2196574966 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
6 Hb_001675_190 0.2284733091 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
7 Hb_003912_030 0.2294931928 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
8 Hb_006052_030 0.2308730414 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
9 Hb_000160_330 0.2312104762 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
10 Hb_000836_290 0.2312170352 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_002902_080 0.2320259212 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
12 Hb_000883_030 0.2394188423 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
13 Hb_009851_050 0.2427705868 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
14 Hb_001232_100 0.2432171318 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_007765_040 0.24551494 - - Cytosolic enolase isoform 3 [Theobroma cacao]
16 Hb_000784_070 0.245944915 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
17 Hb_000207_190 0.2460737548 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
18 Hb_000011_220 0.2471958293 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
19 Hb_002631_070 0.2494383447 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
20 Hb_043792_040 0.2499399364 - - hypothetical protein, partial [Rosa rugosa]

Gene co-expression network

sample Hb_002875_050 Hb_002875_050 Hb_001491_030 Hb_001491_030 Hb_002875_050--Hb_001491_030 Hb_000421_130 Hb_000421_130 Hb_002875_050--Hb_000421_130 Hb_000058_110 Hb_000058_110 Hb_002875_050--Hb_000058_110 Hb_004306_040 Hb_004306_040 Hb_002875_050--Hb_004306_040 Hb_001675_190 Hb_001675_190 Hb_002875_050--Hb_001675_190 Hb_003912_030 Hb_003912_030 Hb_002875_050--Hb_003912_030 Hb_007765_040 Hb_007765_040 Hb_001491_030--Hb_007765_040 Hb_000056_130 Hb_000056_130 Hb_001491_030--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_001491_030--Hb_002226_080 Hb_001491_030--Hb_000058_110 Hb_001491_030--Hb_001675_190 Hb_000359_310 Hb_000359_310 Hb_001491_030--Hb_000359_310 Hb_008147_050 Hb_008147_050 Hb_000421_130--Hb_008147_050 Hb_001504_090 Hb_001504_090 Hb_000421_130--Hb_001504_090 Hb_001390_010 Hb_001390_010 Hb_000421_130--Hb_001390_010 Hb_000207_190 Hb_000207_190 Hb_000421_130--Hb_000207_190 Hb_001195_190 Hb_001195_190 Hb_000421_130--Hb_001195_190 Hb_000058_110--Hb_002226_080 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_009851_050 Hb_009851_050 Hb_004306_040--Hb_009851_050 Hb_028707_080 Hb_028707_080 Hb_004306_040--Hb_028707_080 Hb_002902_080 Hb_002902_080 Hb_004306_040--Hb_002902_080 Hb_004306_040--Hb_000058_110 Hb_000365_330 Hb_000365_330 Hb_004306_040--Hb_000365_330 Hb_000008_270 Hb_000008_270 Hb_004306_040--Hb_000008_270 Hb_011926_040 Hb_011926_040 Hb_001675_190--Hb_011926_040 Hb_001675_190--Hb_000058_110 Hb_001675_190--Hb_000056_130 Hb_000200_350 Hb_000200_350 Hb_001675_190--Hb_000200_350 Hb_006810_030 Hb_006810_030 Hb_001675_190--Hb_006810_030 Hb_000853_210 Hb_000853_210 Hb_003912_030--Hb_000853_210 Hb_004680_120 Hb_004680_120 Hb_003912_030--Hb_004680_120 Hb_000086_440 Hb_000086_440 Hb_003912_030--Hb_000086_440 Hb_000667_030 Hb_000667_030 Hb_003912_030--Hb_000667_030 Hb_004117_100 Hb_004117_100 Hb_003912_030--Hb_004117_100 Hb_034432_030 Hb_034432_030 Hb_003912_030--Hb_034432_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.365244 1.95945 1.84162 9.36361 9.91988 3.2982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746283 1.54487 4.25914 1.75668 6.66005

CAGE analysis