Hb_002875_060

Information

Type -
Description -
Location Contig2875: 68045-69872
Sequence    

Annotation

kegg
ID csv:101206421
description uncharacterized LOC101206421
nr
ID XP_010100692.1
description hypothetical protein L484_023461 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RDE7
description Uncharacterized protein OS=Morus notabilis GN=L484_023461 PE=4 SV=1
Gene Ontology
ID GO:0009534
description plant f21f14-40 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30017: 67774-70299
cDNA
(Sanger)
(ID:Location)		 022_N18.ab1: 67774-69734 , 040_B24.ab1: 68178-70299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002875_060 0.0 - - hypothetical protein L484_023461 [Morus notabilis]
2 Hb_001433_130 0.1856059119 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
3 Hb_000928_010 0.187831952 - - Cell division protein ftsZ, putative [Ricinus communis]
4 Hb_001399_010 0.1916448986 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000608_170 0.1918137585 - - F23N19.4 [Arabidopsis thaliana]
6 Hb_005282_020 0.196470507 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
7 Hb_000424_040 0.2016786888 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
8 Hb_008698_010 0.2034408259 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000318_130 0.2049395387 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_005725_220 0.2053886208 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
11 Hb_003976_020 0.2060905642 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
12 Hb_001229_020 0.2071280907 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_023313_010 0.2095315575 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
14 Hb_002171_030 0.2175555684 - - plastid acyl-ACP thioesterase [Vernicia fordii]
15 Hb_002078_300 0.2193626063 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
16 Hb_001138_060 0.2213660272 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
17 Hb_000340_150 0.2214869066 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
18 Hb_000638_160 0.2236270306 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
19 Hb_005588_110 0.2240835218 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
20 Hb_004128_070 0.2244160927 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002875_060 Hb_002875_060 Hb_001433_130 Hb_001433_130 Hb_002875_060--Hb_001433_130 Hb_000928_010 Hb_000928_010 Hb_002875_060--Hb_000928_010 Hb_001399_010 Hb_001399_010 Hb_002875_060--Hb_001399_010 Hb_000608_170 Hb_000608_170 Hb_002875_060--Hb_000608_170 Hb_005282_020 Hb_005282_020 Hb_002875_060--Hb_005282_020 Hb_000424_040 Hb_000424_040 Hb_002875_060--Hb_000424_040 Hb_000856_150 Hb_000856_150 Hb_001433_130--Hb_000856_150 Hb_001433_130--Hb_001399_010 Hb_002503_020 Hb_002503_020 Hb_001433_130--Hb_002503_020 Hb_001946_330 Hb_001946_330 Hb_001433_130--Hb_001946_330 Hb_000853_190 Hb_000853_190 Hb_001433_130--Hb_000853_190 Hb_000928_010--Hb_000608_170 Hb_000462_090 Hb_000462_090 Hb_000928_010--Hb_000462_090 Hb_000340_150 Hb_000340_150 Hb_000928_010--Hb_000340_150 Hb_000928_010--Hb_005282_020 Hb_002685_060 Hb_002685_060 Hb_000928_010--Hb_002685_060 Hb_001584_200 Hb_001584_200 Hb_000928_010--Hb_001584_200 Hb_001138_060 Hb_001138_060 Hb_001399_010--Hb_001138_060 Hb_004128_070 Hb_004128_070 Hb_001399_010--Hb_004128_070 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_001863_020 Hb_001863_020 Hb_001399_010--Hb_001863_020 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_000608_170--Hb_000462_090 Hb_000608_170--Hb_005282_020 Hb_000608_170--Hb_002685_060 Hb_114310_110 Hb_114310_110 Hb_000608_170--Hb_114310_110 Hb_000608_170--Hb_000340_150 Hb_003544_010 Hb_003544_010 Hb_005282_020--Hb_003544_010 Hb_000676_200 Hb_000676_200 Hb_005282_020--Hb_000676_200 Hb_000012_160 Hb_000012_160 Hb_005282_020--Hb_000012_160 Hb_005282_020--Hb_002685_060 Hb_000318_130 Hb_000318_130 Hb_005282_020--Hb_000318_130 Hb_011671_190 Hb_011671_190 Hb_000424_040--Hb_011671_190 Hb_000699_100 Hb_000699_100 Hb_000424_040--Hb_000699_100 Hb_005147_080 Hb_005147_080 Hb_000424_040--Hb_005147_080 Hb_000705_250 Hb_000705_250 Hb_000424_040--Hb_000705_250 Hb_010344_020 Hb_010344_020 Hb_000424_040--Hb_010344_020 Hb_000809_240 Hb_000809_240 Hb_000424_040--Hb_000809_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.0571 4.61107 54.8713 25.5095 25.7325 21.2704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.9595 31.383 117.888 13.8637 156.505

CAGE analysis