Hb_002875_080

Information

Type -
Description -
Location Contig2875: 81762-83180
Sequence    

Annotation

kegg
ID rcu:RCOM_0143940
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002533328.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LNK1
description Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1
trembl
ID B9T509
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0143940 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ras-related protein raba3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30019: 81763-83074
cDNA
(Sanger)
(ID:Location)		 025_D22.ab1: 81776-82041

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002875_080 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001008_060 0.1057726633 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
3 Hb_000001_050 0.1129858709 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
4 Hb_000389_060 0.1132258032 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
5 Hb_009773_020 0.1207006212 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
6 Hb_010931_090 0.1224957997 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029866_040 0.12618723 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
8 Hb_011794_070 0.1264008582 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
9 Hb_000085_320 0.1265302494 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
10 Hb_001486_260 0.1279037248 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
11 Hb_004738_080 0.1284304686 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
12 Hb_000329_040 0.1295842532 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
13 Hb_000260_120 0.1297032344 - - DNA binding protein, putative [Ricinus communis]
14 Hb_010172_080 0.1322361621 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_000295_120 0.1328806549 - - -
16 Hb_007919_050 0.1329284699 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
17 Hb_002874_190 0.133368048 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
18 Hb_000703_140 0.1334142963 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
19 Hb_007741_050 0.1340543441 - - vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_001922_190 0.1353240212 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002875_080 Hb_002875_080 Hb_001008_060 Hb_001008_060 Hb_002875_080--Hb_001008_060 Hb_000001_050 Hb_000001_050 Hb_002875_080--Hb_000001_050 Hb_000389_060 Hb_000389_060 Hb_002875_080--Hb_000389_060 Hb_009773_020 Hb_009773_020 Hb_002875_080--Hb_009773_020 Hb_010931_090 Hb_010931_090 Hb_002875_080--Hb_010931_090 Hb_029866_040 Hb_029866_040 Hb_002875_080--Hb_029866_040 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_001008_060--Hb_022250_040 Hb_000085_320 Hb_000085_320 Hb_001008_060--Hb_000085_320 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_000001_050--Hb_029866_040 Hb_000046_110 Hb_000046_110 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_008311_010 Hb_008311_010 Hb_000001_050--Hb_008311_010 Hb_001677_110 Hb_001677_110 Hb_000001_050--Hb_001677_110 Hb_000260_120 Hb_000260_120 Hb_000001_050--Hb_000260_120 Hb_004102_190 Hb_004102_190 Hb_000389_060--Hb_004102_190 Hb_001486_260 Hb_001486_260 Hb_000389_060--Hb_001486_260 Hb_001104_120 Hb_001104_120 Hb_000389_060--Hb_001104_120 Hb_092272_020 Hb_092272_020 Hb_000389_060--Hb_092272_020 Hb_000061_480 Hb_000061_480 Hb_000389_060--Hb_000061_480 Hb_002030_040 Hb_002030_040 Hb_009773_020--Hb_002030_040 Hb_065525_020 Hb_065525_020 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_001105_070 Hb_001105_070 Hb_009773_020--Hb_001105_070 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_010655_010 Hb_010655_010 Hb_010931_090--Hb_010655_010 Hb_010931_090--Hb_000260_120 Hb_010931_090--Hb_001008_060 Hb_004545_060 Hb_004545_060 Hb_010931_090--Hb_004545_060 Hb_003038_030 Hb_003038_030 Hb_010931_090--Hb_003038_030 Hb_010172_080 Hb_010172_080 Hb_010931_090--Hb_010172_080 Hb_000377_060 Hb_000377_060 Hb_029866_040--Hb_000377_060 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_011381_100 Hb_011381_100 Hb_029866_040--Hb_011381_100 Hb_001109_020 Hb_001109_020 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.6635 4.47519 9.38263 34.388 32.9493 32.6824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3196 64.7202 48.405 9.88101 3.87372

CAGE analysis