Hb_002876_020

Information

Type -
Description -
Location Contig2876: 16186-20059
Sequence    

Annotation

kegg
ID rcu:RCOM_1594420
description maf protein, putative
nr
ID XP_012071859.1
description PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
swissprot
ID Q54TC5
description Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum GN=DDB_G0281937 PE=3 SV=1
trembl
ID A0A067L334
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04434 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30024: 16567-20265 , PASA_asmbl_30025: 17935-18328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_020 0.0 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
2 Hb_003106_100 0.0404982534 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
3 Hb_000649_140 0.0862938007 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
4 Hb_001019_150 0.089839664 - - Acyl-protein thioesterase, putative [Ricinus communis]
5 Hb_000428_060 0.0903023327 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_001353_010 0.1028372917 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
7 Hb_001242_080 0.1040955914 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
8 Hb_001892_070 0.104529797 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
9 Hb_000120_770 0.104773793 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000035_480 0.1060759327 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
11 Hb_001410_060 0.1066692171 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
12 Hb_001575_060 0.1066696127 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
13 Hb_000457_290 0.1067193164 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_000056_070 0.1078383981 - - -
15 Hb_000032_370 0.1083795745 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
16 Hb_000983_030 0.1090817806 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
17 Hb_001123_160 0.1092660721 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_000403_070 0.1106996702 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000392_550 0.1116456341 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002609_200 0.11368826 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_020 Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_002876_020--Hb_003106_100 Hb_000649_140 Hb_000649_140 Hb_002876_020--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_002876_020--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_003106_100--Hb_000649_140 Hb_003106_100--Hb_001019_150 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000649_140--Hb_000428_060 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001019_150--Hb_001353_010 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_000120_770 Hb_000120_770 Hb_001242_080--Hb_000120_770 Hb_001892_070 Hb_001892_070 Hb_001242_080--Hb_001892_070 Hb_002392_010 Hb_002392_010 Hb_001242_080--Hb_002392_010 Hb_001242_080--Hb_003106_100 Hb_001575_060 Hb_001575_060 Hb_001242_080--Hb_001575_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.782588 0.752687 2.29249 4.50763 0.710638 1.1896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98801 5.93802 2.59241 2.76144 3.78178

CAGE analysis