Hb_002876_030

Information

Type -
Description -
Location Contig2876: 23563-25068
Sequence    

Annotation

kegg
ID rcu:RCOM_1594430
description acyltransferase, putative
nr
ID XP_012071864.1
description PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
swissprot
ID Q9LN49
description 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1
trembl
ID A0A067L1Z1
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_04435 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 3-ketoacyl- synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30026: 23474-25293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_030 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
2 Hb_005396_040 0.1316577193 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_002471_070 0.1402664103 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
4 Hb_006070_010 0.1431250954 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
5 Hb_003207_110 0.1511411453 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
6 Hb_000139_330 0.1636438177 - - short chain dehydrogenase, putative [Ricinus communis]
7 Hb_124315_040 0.1683205639 - - hypothetical protein 19 [Hevea brasiliensis]
8 Hb_000032_240 0.1766751398 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000481_020 0.1769857588 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
10 Hb_010483_020 0.1804456101 - - latex allergen [Hevea brasiliensis]
11 Hb_006120_200 0.1808583152 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
12 Hb_023214_010 0.1833906134 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
13 Hb_004659_120 0.1840567068 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
14 Hb_004032_440 0.1862536157 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
15 Hb_001922_190 0.1874134463 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
16 Hb_007766_010 0.187451454 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
17 Hb_001696_030 0.1883638533 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000762_020 0.1914080112 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
19 Hb_000957_040 0.1917349957 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
20 Hb_055335_010 0.1958261083 - - PREDICTED: tetraspanin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_030 Hb_002876_030 Hb_005396_040 Hb_005396_040 Hb_002876_030--Hb_005396_040 Hb_002471_070 Hb_002471_070 Hb_002876_030--Hb_002471_070 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_003207_110 Hb_003207_110 Hb_002876_030--Hb_003207_110 Hb_000139_330 Hb_000139_330 Hb_002876_030--Hb_000139_330 Hb_124315_040 Hb_124315_040 Hb_002876_030--Hb_124315_040 Hb_023214_010 Hb_023214_010 Hb_005396_040--Hb_023214_010 Hb_005396_040--Hb_124315_040 Hb_005396_040--Hb_003207_110 Hb_005396_040--Hb_002471_070 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_002471_070--Hb_003207_110 Hb_000920_150 Hb_000920_150 Hb_002471_070--Hb_000920_150 Hb_002471_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_002471_070--Hb_001035_040 Hb_007766_010 Hb_007766_010 Hb_006070_010--Hb_007766_010 Hb_055335_010 Hb_055335_010 Hb_006070_010--Hb_055335_010 Hb_001315_020 Hb_001315_020 Hb_006070_010--Hb_001315_020 Hb_006120_200 Hb_006120_200 Hb_006070_010--Hb_006120_200 Hb_000481_020 Hb_000481_020 Hb_006070_010--Hb_000481_020 Hb_000762_020 Hb_000762_020 Hb_006070_010--Hb_000762_020 Hb_003207_110--Hb_000920_150 Hb_003207_110--Hb_023214_010 Hb_003207_110--Hb_001035_040 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_006501_110 Hb_006501_110 Hb_000139_330--Hb_006501_110 Hb_000548_030 Hb_000548_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020 Hb_002603_130 Hb_002603_130 Hb_000139_330--Hb_002603_130 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
500.544 11.2177 8.44504 233.028 124.876 137.308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
539.713 111.765 284.187 25.2917 19.3431

CAGE analysis