Hb_002876_130

Information

Type -
Description -
Location Contig2876: 108088-121085
Sequence    

Annotation

kegg
ID rcu:RCOM_0956920
description hypothetical protein
nr
ID XP_012075937.1
description PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11970 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105637143

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30036: 108084-114284
cDNA
(Sanger)
(ID:Location)		 047_J04.ab1: 108084-109168

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_130 0.0 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
2 Hb_000289_040 0.039936671 - - Poly(A) polymerase alpha, putative [Ricinus communis]
3 Hb_000928_220 0.05372777 - - PREDICTED: protein SCAI [Jatropha curcas]
4 Hb_140049_040 0.0559086767 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
5 Hb_002078_110 0.0605567868 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
6 Hb_004195_200 0.0628409075 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
7 Hb_000076_160 0.0628540286 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
8 Hb_000679_310 0.0644401865 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
9 Hb_020831_030 0.065521796 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003927_040 0.0659519578 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_008103_060 0.0666083657 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
12 Hb_001277_020 0.0669271642 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
13 Hb_000614_210 0.0675946033 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
14 Hb_000087_060 0.0683692833 - - protein transporter, putative [Ricinus communis]
15 Hb_154114_010 0.0684305883 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
16 Hb_000402_080 0.0698423816 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
17 Hb_002325_040 0.0703081172 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
18 Hb_002375_010 0.070389727 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
19 Hb_002835_230 0.0705142126 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000174_060 0.0709668502 - - zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002876_130 Hb_002876_130 Hb_000289_040 Hb_000289_040 Hb_002876_130--Hb_000289_040 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_140049_040 Hb_140049_040 Hb_002876_130--Hb_140049_040 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_000289_040--Hb_140049_040 Hb_014361_070 Hb_014361_070 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_000928_220--Hb_000076_160 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_020831_030 Hb_020831_030 Hb_004195_200--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_004195_200--Hb_003640_040 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.114 24.6912 17.8654 14.0903 20.9704 19.8039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1712 15.6071 11.6057 17.5933 10.9443

CAGE analysis