Hb_002876_190

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2876: 189110-190495
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa017519mg
description hypothetical protein
nr
ID XP_007199010.1
description hypothetical protein PRUPE_ppa017519mg [Prunus persica]
swissprot
ID Q2Z2E9
description Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1
trembl
ID M5VGL5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017519mg PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_190 0.0 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
2 Hb_001775_130 0.0368000012 - - Prephenate dehydratase [Hevea brasiliensis]
3 Hb_039096_010 0.0692768172 - - unknown [Populus trichocarpa]
4 Hb_003371_040 0.0811809583 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
5 Hb_113945_010 0.1030672273 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_000106_060 0.1049223912 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
7 Hb_006314_020 0.1057236398 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
8 Hb_001856_150 0.1074646524 - - -
9 Hb_170861_010 0.1083899616 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_003171_070 0.1103021979 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
11 Hb_003435_070 0.1158639873 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
12 Hb_000098_210 0.1300291215 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
13 Hb_005333_120 0.1301837565 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
14 Hb_004875_040 0.1327509208 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
15 Hb_000934_180 0.134554959 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
16 Hb_000429_030 0.1364343374 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_007161_020 0.1409356225 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
18 Hb_000676_380 0.14287808 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_000286_030 0.1531450068 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_148817_010 0.1560594479 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_190 Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_002876_190--Hb_001775_130 Hb_039096_010 Hb_039096_010 Hb_002876_190--Hb_039096_010 Hb_003371_040 Hb_003371_040 Hb_002876_190--Hb_003371_040 Hb_113945_010 Hb_113945_010 Hb_002876_190--Hb_113945_010 Hb_000106_060 Hb_000106_060 Hb_002876_190--Hb_000106_060 Hb_006314_020 Hb_006314_020 Hb_002876_190--Hb_006314_020 Hb_001775_130--Hb_039096_010 Hb_001775_130--Hb_003371_040 Hb_003171_070 Hb_003171_070 Hb_001775_130--Hb_003171_070 Hb_001775_130--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_001775_130--Hb_001856_150 Hb_039096_010--Hb_113945_010 Hb_039096_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_039096_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_039096_010--Hb_170861_010 Hb_003371_040--Hb_006314_020 Hb_000429_030 Hb_000429_030 Hb_003371_040--Hb_000429_030 Hb_003371_040--Hb_003171_070 Hb_003371_040--Hb_001856_150 Hb_113945_010--Hb_170861_010 Hb_113945_010--Hb_000106_060 Hb_113945_010--Hb_000934_180 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_000106_060--Hb_170861_010 Hb_000106_060--Hb_000934_180 Hb_000106_060--Hb_001775_130 Hb_006314_020--Hb_001856_150 Hb_000230_160 Hb_000230_160 Hb_006314_020--Hb_000230_160 Hb_006314_020--Hb_003171_070 Hb_148817_010 Hb_148817_010 Hb_006314_020--Hb_148817_010 Hb_000081_030 Hb_000081_030 Hb_006314_020--Hb_000081_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.57788 0.115527 3.93307 0.0140592 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.94797 0.449034

CAGE analysis