Hb_002876_200

Information

Type -
Description -
Location Contig2876: 192295-196018
Sequence    

Annotation

kegg
ID rcu:RCOM_0686930
description hypothetical protein
nr
ID XP_012081092.1
description PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
swissprot
ID B7SY83
description FHA domain-containing protein PS1 OS=Arabidopsis thaliana GN=PS1 PE=2 SV=1
trembl
ID A0A067K2F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17162 PE=4 SV=1
Gene Ontology
ID GO:0019219
description forkhead-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30041: 192528-193476 , PASA_asmbl_30043: 195173-195855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_200 0.0 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
2 Hb_001488_290 0.0738077876 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_004586_040 0.1144960725 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
4 Hb_050847_040 0.1257643576 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
5 Hb_000274_050 0.1303151848 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_005000_010 0.1361821397 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
7 Hb_000086_180 0.139005347 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
8 Hb_000544_200 0.1460304862 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
9 Hb_002897_010 0.146473211 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
10 Hb_004330_020 0.1562348903 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
11 Hb_002999_030 0.1629524137 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
12 Hb_001188_050 0.1653009155 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004920_050 0.1659256025 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
14 Hb_002463_050 0.1676907609 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000968_060 0.1680364807 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
16 Hb_001439_210 0.1702291634 - - EXS family protein [Populus trichocarpa]
17 Hb_000890_020 0.1731725104 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
18 Hb_000015_150 0.1739166487 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
19 Hb_000320_310 0.1742452508 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
20 Hb_000077_110 0.1771757495 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_200 Hb_002876_200 Hb_001488_290 Hb_001488_290 Hb_002876_200--Hb_001488_290 Hb_004586_040 Hb_004586_040 Hb_002876_200--Hb_004586_040 Hb_050847_040 Hb_050847_040 Hb_002876_200--Hb_050847_040 Hb_000274_050 Hb_000274_050 Hb_002876_200--Hb_000274_050 Hb_005000_010 Hb_005000_010 Hb_002876_200--Hb_005000_010 Hb_000086_180 Hb_000086_180 Hb_002876_200--Hb_000086_180 Hb_001488_290--Hb_000086_180 Hb_001488_290--Hb_004586_040 Hb_001488_290--Hb_050847_040 Hb_002999_030 Hb_002999_030 Hb_001488_290--Hb_002999_030 Hb_001141_050 Hb_001141_050 Hb_001488_290--Hb_001141_050 Hb_003688_010 Hb_003688_010 Hb_004586_040--Hb_003688_010 Hb_000544_200 Hb_000544_200 Hb_004586_040--Hb_000544_200 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060 Hb_000963_050 Hb_000963_050 Hb_000274_050--Hb_000963_050 Hb_001188_050 Hb_001188_050 Hb_000274_050--Hb_001188_050 Hb_000274_050--Hb_005000_010 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_000274_050--Hb_001439_210 Hb_000320_310 Hb_000320_310 Hb_005000_010--Hb_000320_310 Hb_005000_010--Hb_004330_020 Hb_004218_200 Hb_004218_200 Hb_005000_010--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_005000_010--Hb_010863_030 Hb_000008_390 Hb_000008_390 Hb_000086_180--Hb_000008_390 Hb_001160_110 Hb_001160_110 Hb_000086_180--Hb_001160_110 Hb_000032_410 Hb_000032_410 Hb_000086_180--Hb_000032_410 Hb_001663_130 Hb_001663_130 Hb_000086_180--Hb_001663_130 Hb_000649_330 Hb_000649_330 Hb_000086_180--Hb_000649_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.575657 1.2518 6.79286 4.48181 1.18199 1.10352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0592718 0.0466423 0.0891928 1.41538 1.98958

CAGE analysis