Hb_002876_210

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2876: 198357-199934
Sequence    

Annotation

kegg
ID vvi:100248677
description protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
nr
ID XP_012081095.1
description PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A067K5K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17163 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30044: 198255-199977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_210 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
2 Hb_002965_050 0.0551385609 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
3 Hb_002900_120 0.0722458619 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
4 Hb_000711_010 0.0726284499 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
5 Hb_000815_310 0.0847704443 - - protein kinase, putative [Ricinus communis]
6 Hb_000452_030 0.0861875129 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
7 Hb_002217_090 0.0915028089 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
8 Hb_000156_090 0.0920701637 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
9 Hb_007416_260 0.0929750961 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
10 Hb_000015_090 0.0934972455 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
11 Hb_001691_040 0.0935805048 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
12 Hb_002774_200 0.0958251534 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
13 Hb_000912_100 0.0962458745 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
14 Hb_004375_110 0.0980291077 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
15 Hb_000258_420 0.0984623966 - - sucrose transporter 2A [Hevea brasiliensis]
16 Hb_000417_300 0.1008781083 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
17 Hb_003777_130 0.1008919282 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
18 Hb_060094_010 0.1021296749 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
19 Hb_009372_020 0.1035384628 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_009288_010 0.1042961552 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002876_210 Hb_002876_210 Hb_002965_050 Hb_002965_050 Hb_002876_210--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_002876_210--Hb_002900_120 Hb_000711_010 Hb_000711_010 Hb_002876_210--Hb_000711_010 Hb_000815_310 Hb_000815_310 Hb_002876_210--Hb_000815_310 Hb_000452_030 Hb_000452_030 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_002965_050--Hb_000815_310 Hb_002965_050--Hb_000711_010 Hb_002900_120--Hb_000156_090 Hb_002900_120--Hb_000711_010 Hb_003581_280 Hb_003581_280 Hb_002900_120--Hb_003581_280 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020 Hb_002349_030 Hb_002349_030 Hb_000711_010--Hb_002349_030 Hb_000012_240 Hb_000012_240 Hb_000711_010--Hb_000012_240 Hb_000711_010--Hb_060094_010 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000815_310--Hb_033152_090 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_000015_090 Hb_000015_090 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_002259_170 Hb_002259_170 Hb_000452_030--Hb_002259_170 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_000015_200 Hb_000015_200 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_001500_030 Hb_001500_030 Hb_002217_090--Hb_001500_030 Hb_004128_030 Hb_004128_030 Hb_002217_090--Hb_004128_030 Hb_000912_100 Hb_000912_100 Hb_002217_090--Hb_000912_100 Hb_003747_210 Hb_003747_210 Hb_002217_090--Hb_003747_210 Hb_002217_090--Hb_000711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14011 29.7685 21.166 25.4059 4.1346 6.37047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01088 9.45808 8.3344 9.29317 17.5435

CAGE analysis