Hb_002876_250

Information

Type -
Description -
Location Contig2876: 226561-230114
Sequence    

Annotation

kegg
ID rcu:RCOM_0686670
description protein with unknown function (EC:1.3.1.74)
nr
ID XP_012070256.1
description PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
swissprot
ID O22938
description Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana GN=PXC3 PE=2 SV=1
trembl
ID B9SLH0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686670 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like tyrosine-protein kinase at2g41820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30054: 226556-226792 , PASA_asmbl_30056: 228790-229692
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_250 0.0 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
2 Hb_000116_210 0.085169584 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
3 Hb_000120_160 0.10513437 - - unnamed protein product [Vitis vinifera]
4 Hb_000207_290 0.1216091193 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
5 Hb_000805_230 0.1221077003 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
6 Hb_000836_600 0.1268499371 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
7 Hb_000805_190 0.1292519357 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
8 Hb_001049_160 0.1308759076 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_001486_200 0.1373631735 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
10 Hb_000059_130 0.1374618124 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_002217_090 0.1395823441 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
12 Hb_003747_210 0.1396774745 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
13 Hb_002915_070 0.1424161544 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
14 Hb_143766_030 0.1447467268 - - protein with unknown function [Ricinus communis]
15 Hb_012107_010 0.145222339 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_001699_230 0.1453127414 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
17 Hb_000110_300 0.1472698811 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
18 Hb_004724_330 0.1480506313 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000069_780 0.1490575393 - - atpob1, putative [Ricinus communis]
20 Hb_007576_200 0.1491052583 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002876_250 Hb_002876_250 Hb_000116_210 Hb_000116_210 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_000116_210--Hb_000805_230 Hb_001288_070 Hb_001288_070 Hb_000116_210--Hb_001288_070 Hb_000116_210--Hb_000120_160 Hb_002154_020 Hb_002154_020 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_000120_160--Hb_000805_230 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_000120_160--Hb_001288_070 Hb_000120_160--Hb_002154_020 Hb_000207_290--Hb_000805_190 Hb_000056_280 Hb_000056_280 Hb_000207_290--Hb_000056_280 Hb_000207_290--Hb_000116_210 Hb_001049_160 Hb_001049_160 Hb_000207_290--Hb_001049_160 Hb_001486_200 Hb_001486_200 Hb_000207_290--Hb_001486_200 Hb_002915_070 Hb_002915_070 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_001133_010 Hb_001133_010 Hb_000836_600--Hb_001133_010 Hb_004013_020 Hb_004013_020 Hb_000836_600--Hb_004013_020 Hb_000200_170 Hb_000200_170 Hb_000836_600--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_000836_600--Hb_143766_030 Hb_002849_070 Hb_002849_070 Hb_000836_600--Hb_002849_070 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05137 14.6272 3.10179 7.11151 0.607276 1.11513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11901 1.27051 3.15841 4.26056 3.71447

CAGE analysis