Hb_002876_270

Information

Type -
Description -
Location Contig2876: 241378-253136
Sequence    

Annotation

kegg
ID rcu:RCOM_0686650
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative
nr
ID XP_012069973.1
description PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
swissprot
ID Q94AH3
description Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1
trembl
ID A0A067LI84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03916 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable magnesium transporter nipa4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_270 0.0 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
2 Hb_000548_070 0.1076104878 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_006277_010 0.1081044372 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
4 Hb_006816_470 0.1149622322 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
5 Hb_003044_080 0.1190018127 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
6 Hb_021943_090 0.1213729927 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
7 Hb_006059_010 0.1227859808 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
8 Hb_003305_040 0.1228398865 - - AP47/50p mRNA family protein [Populus trichocarpa]
9 Hb_000019_180 0.1250057726 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
10 Hb_001946_380 0.1283006011 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
11 Hb_001728_140 0.1285667497 - - -
12 Hb_011861_100 0.1289121386 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000946_110 0.1294072589 - - GTP cyclohydrolase I, putative [Ricinus communis]
14 Hb_000297_120 0.1301896493 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_002392_010 0.1302203531 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
16 Hb_005601_040 0.1305159025 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
17 Hb_011606_020 0.1310017613 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
18 Hb_011139_040 0.1310456886 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
19 Hb_002110_100 0.131168833 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
20 Hb_000116_130 0.1319941387 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_270 Hb_002876_270 Hb_000548_070 Hb_000548_070 Hb_002876_270--Hb_000548_070 Hb_006277_010 Hb_006277_010 Hb_002876_270--Hb_006277_010 Hb_006816_470 Hb_006816_470 Hb_002876_270--Hb_006816_470 Hb_003044_080 Hb_003044_080 Hb_002876_270--Hb_003044_080 Hb_021943_090 Hb_021943_090 Hb_002876_270--Hb_021943_090 Hb_006059_010 Hb_006059_010 Hb_002876_270--Hb_006059_010 Hb_001728_140 Hb_001728_140 Hb_000548_070--Hb_001728_140 Hb_009615_060 Hb_009615_060 Hb_000548_070--Hb_009615_060 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_004046_030 Hb_004046_030 Hb_006277_010--Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_006277_010--Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_000185_220 Hb_000185_220 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040 Hb_008725_170 Hb_008725_170 Hb_006816_470--Hb_008725_170 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006816_470--Hb_006277_010 Hb_000406_130 Hb_000406_130 Hb_006816_470--Hb_000406_130 Hb_003044_080--Hb_000800_090 Hb_003044_080--Hb_009615_060 Hb_003044_080--Hb_001728_140 Hb_002631_130 Hb_002631_130 Hb_003044_080--Hb_002631_130 Hb_003044_080--Hb_000950_010 Hb_003994_030 Hb_003994_030 Hb_021943_090--Hb_003994_030 Hb_000979_130 Hb_000979_130 Hb_021943_090--Hb_000979_130 Hb_000367_180 Hb_000367_180 Hb_021943_090--Hb_000367_180 Hb_000260_510 Hb_000260_510 Hb_021943_090--Hb_000260_510 Hb_021943_090--Hb_000800_090 Hb_000665_180 Hb_000665_180 Hb_021943_090--Hb_000665_180 Hb_006059_010--Hb_000185_220 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_002660_170 Hb_002660_170 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629395 0.739243 1.82815 3.85528 0.827652 0.604965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18236 2.01487 3.42842 2.89671 4.20796

CAGE analysis