Hb_002876_290

Information

Type -
Description -
Location Contig2876: 278846-283558
Sequence    

Annotation

kegg
ID egr:104446353
description uncharacterized LOC104446353
nr
ID XP_010058516.1
description PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M5WDJ3
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019746mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_290 0.0 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
2 Hb_006588_150 0.1178188611 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
3 Hb_009476_140 0.1261889734 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
4 Hb_003211_010 0.1286819387 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
5 Hb_000025_340 0.1461913993 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
6 Hb_073395_010 0.158119206 - - -
7 Hb_037767_010 0.1584672457 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_003371_230 0.1646737237 - - lactase-like b precursor [Scleropages formosus]
9 Hb_000530_010 0.1691081838 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
10 Hb_001369_440 0.1708168969 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
11 Hb_011716_090 0.175603921 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
12 Hb_000740_110 0.1771957877 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
13 Hb_032808_030 0.1800102288 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_000087_050 0.1803382609 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
15 Hb_000213_120 0.1825997403 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_097347_010 0.18261818 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
17 Hb_156850_070 0.1836196758 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000227_060 0.1849931808 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
19 Hb_002739_150 0.1853338507 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
20 Hb_002662_020 0.1863822267 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]

Gene co-expression network

sample Hb_002876_290 Hb_002876_290 Hb_006588_150 Hb_006588_150 Hb_002876_290--Hb_006588_150 Hb_009476_140 Hb_009476_140 Hb_002876_290--Hb_009476_140 Hb_003211_010 Hb_003211_010 Hb_002876_290--Hb_003211_010 Hb_000025_340 Hb_000025_340 Hb_002876_290--Hb_000025_340 Hb_073395_010 Hb_073395_010 Hb_002876_290--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002876_290--Hb_037767_010 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090 Hb_009476_140--Hb_006588_150 Hb_009476_140--Hb_001369_440 Hb_097347_010 Hb_097347_010 Hb_009476_140--Hb_097347_010 Hb_060715_010 Hb_060715_010 Hb_009476_140--Hb_060715_010 Hb_009476_140--Hb_003211_010 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_011716_090 Hb_011716_090 Hb_003211_010--Hb_011716_090 Hb_008143_070 Hb_008143_070 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_002272_080 Hb_002272_080 Hb_000025_340--Hb_002272_080 Hb_009838_050 Hb_009838_050 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_002234_190 Hb_002234_190 Hb_073395_010--Hb_002234_190 Hb_073395_010--Hb_000025_340 Hb_001902_190 Hb_001902_190 Hb_073395_010--Hb_001902_190 Hb_145629_010 Hb_145629_010 Hb_073395_010--Hb_145629_010 Hb_005143_040 Hb_005143_040 Hb_073395_010--Hb_005143_040 Hb_037767_010--Hb_002234_190 Hb_037767_010--Hb_073395_010 Hb_037767_010--Hb_000025_340 Hb_000426_030 Hb_000426_030 Hb_037767_010--Hb_000426_030 Hb_037767_010--Hb_002272_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.791855 2.11839 0.0775397 1.41278 0.814742 1.81362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0351 1.10402 0.274438 1.64917 0.191147

CAGE analysis