Hb_002876_300

Information

Type -
Description -
Location Contig2876: 284758-289716
Sequence    

Annotation

kegg
ID rcu:RCOM_0785090
description histidinol-phosphate aminotransferase, putative (EC:2.6.1.9)
nr
ID XP_012069876.1
description PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
swissprot
ID O82030
description Histidinol-phosphate aminotransferase, chloroplastic OS=Nicotiana tabacum GN=HPA PE=2 SV=1
trembl
ID B9SB59
description Histidinol-phosphate aminotransferase, putative OS=Ricinus communis GN=RCOM_0785090 PE=3 SV=1
Gene Ontology
ID GO:0004400
description histidinol-phosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30057: 284806-289735 , PASA_asmbl_30058: 288716-289335
cDNA
(Sanger)
(ID:Location)		 005_E10.ab1: 284806-287065 , 020_L03.ab1: 284806-287093

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_300 0.0 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
2 Hb_030414_040 0.065768787 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
3 Hb_000826_030 0.0666249898 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
4 Hb_000035_090 0.067191656 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
5 Hb_005946_040 0.0677054666 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
6 Hb_113853_010 0.0700945803 - - 50S ribosomal protein L2, putative [Ricinus communis]
7 Hb_012438_030 0.0740999944 - - PREDICTED: protein sym-1 [Jatropha curcas]
8 Hb_000237_200 0.075061918 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
9 Hb_087313_010 0.0794944934 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001221_440 0.0818759728 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
11 Hb_114310_070 0.0820919357 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
12 Hb_021374_030 0.0826744564 - - hypothetical protein RCOM_0351490 [Ricinus communis]
13 Hb_000163_260 0.0830315449 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
14 Hb_000111_170 0.0837415781 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
15 Hb_001703_040 0.0852165675 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_065525_080 0.086323435 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
17 Hb_004096_240 0.0880515701 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
18 Hb_005288_070 0.0882829076 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_000120_210 0.0894181917 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
20 Hb_002218_020 0.0895980075 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_300 Hb_002876_300 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_000826_030--Hb_001158_160 Hb_000826_030--Hb_030414_040 Hb_010174_090 Hb_010174_090 Hb_000826_030--Hb_010174_090 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.98555 6.7071 13.2818 6.36351 3.88093 5.57174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.38524 6.45925 2.95778 5.33704 10.6888

CAGE analysis