Hb_002876_320

Information

Type -
Description -
Location Contig2876: 295132-303099
Sequence    

Annotation

kegg
ID rcu:RCOM_0686140
description hypothetical protein
nr
ID XP_012069754.1
description PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30061: 295179-296350 , PASA_asmbl_30062: 300535-301777 , PASA_asmbl_30063: 301857-302864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_320 0.0 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
2 Hb_002398_030 0.0704852725 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_000008_220 0.0721058951 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
4 Hb_008120_030 0.0759893117 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
5 Hb_000009_400 0.0771609188 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
6 Hb_033642_030 0.0800325665 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
7 Hb_000445_050 0.0809860032 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
8 Hb_058999_030 0.080999846 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
9 Hb_001635_160 0.082628522 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
10 Hb_002828_020 0.0840893261 - - protein binding protein, putative [Ricinus communis]
11 Hb_007592_030 0.0863158233 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
12 Hb_009049_020 0.0868820229 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
13 Hb_001227_130 0.0871276234 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
14 Hb_000617_100 0.0878322353 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
15 Hb_135831_010 0.0891444781 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
16 Hb_005276_060 0.0918150164 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
17 Hb_000442_150 0.0921927954 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
18 Hb_000683_070 0.0927559125 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
19 Hb_001047_220 0.0928616142 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
20 Hb_000494_080 0.0939566456 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002876_320 Hb_002876_320 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_000009_400 Hb_000009_400 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_001948_130 Hb_001948_130 Hb_000008_220--Hb_001948_130 Hb_000008_220--Hb_000009_400 Hb_005000_320 Hb_005000_320 Hb_000008_220--Hb_005000_320 Hb_000008_220--Hb_058999_030 Hb_000760_020 Hb_000760_020 Hb_000008_220--Hb_000760_020 Hb_008120_030--Hb_001635_160 Hb_011310_210 Hb_011310_210 Hb_008120_030--Hb_011310_210 Hb_000777_050 Hb_000777_050 Hb_008120_030--Hb_000777_050 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_000445_050--Hb_058999_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7971 10.6145 14.1554 19.2629 13.8578 14.7035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4527 6.5738 11.1955 7.84006 8.76088

CAGE analysis