Hb_002876_360

Information

Type -
Description -
Location Contig2876: 316487-317573
Sequence    

Annotation

kegg
ID rcu:RCOM_0686090
description ubiquitin-conjugating enzyme E2, putative (EC:6.3.2.19)
nr
ID XP_002526821.1
description ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
swissprot
ID P35135
description Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1
trembl
ID B9SLF2
description Ubiquitin-conjugating enzyme E2, putative OS=Ricinus communis GN=RCOM_0686090 PE=3 SV=1
Gene Ontology
ID GO:0005524
description ubiquitin-conjugating enzyme e2-17 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30065: 316489-318239 , PASA_asmbl_30066: 316489-318239
cDNA
(Sanger)
(ID:Location)		 003_I10.ab1: 316607-318239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_360 0.0 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
2 Hb_000617_050 0.0886839312 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
3 Hb_002326_180 0.113038936 - - Protein Z, putative [Ricinus communis]
4 Hb_000106_090 0.123667091 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
5 Hb_003638_080 0.1245646164 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
6 Hb_000395_240 0.127283367 - - hypothetical protein CICLE_v10010039mg [Citrus clementina]
7 Hb_000035_440 0.1285088492 - - -
8 Hb_000676_240 0.1358119753 - - thioredoxin H-type 2 [Hevea brasiliensis]
9 Hb_009252_130 0.1358617746 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
10 Hb_000061_480 0.1360268052 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
11 Hb_000599_090 0.1372904976 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
12 Hb_007497_030 0.137295627 - - mutt domain protein, putative [Ricinus communis]
13 Hb_000258_280 0.1400449063 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
14 Hb_003216_100 0.1409105312 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
15 Hb_003044_090 0.1436722382 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
16 Hb_002045_230 0.1444354396 - - Ammonium transporter 2 [Theobroma cacao]
17 Hb_097007_010 0.1453828064 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
18 Hb_000352_140 0.1453996909 - - -
19 Hb_000236_460 0.1470106689 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
20 Hb_005841_050 0.1479872456 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002876_360 Hb_002876_360 Hb_000617_050 Hb_000617_050 Hb_002876_360--Hb_000617_050 Hb_002326_180 Hb_002326_180 Hb_002876_360--Hb_002326_180 Hb_000106_090 Hb_000106_090 Hb_002876_360--Hb_000106_090 Hb_003638_080 Hb_003638_080 Hb_002876_360--Hb_003638_080 Hb_000395_240 Hb_000395_240 Hb_002876_360--Hb_000395_240 Hb_000035_440 Hb_000035_440 Hb_002876_360--Hb_000035_440 Hb_000617_050--Hb_002326_180 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002045_230 Hb_002045_230 Hb_002326_180--Hb_002045_230 Hb_000352_140 Hb_000352_140 Hb_000106_090--Hb_000352_140 Hb_000106_090--Hb_002045_230 Hb_006132_050 Hb_006132_050 Hb_000106_090--Hb_006132_050 Hb_000599_090 Hb_000599_090 Hb_000106_090--Hb_000599_090 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_001863_400 Hb_001863_400 Hb_000395_240--Hb_001863_400 Hb_015175_030 Hb_015175_030 Hb_000395_240--Hb_015175_030 Hb_000199_070 Hb_000199_070 Hb_000395_240--Hb_000199_070 Hb_003058_220 Hb_003058_220 Hb_000395_240--Hb_003058_220 Hb_002701_050 Hb_002701_050 Hb_000395_240--Hb_002701_050 Hb_021409_090 Hb_021409_090 Hb_000395_240--Hb_021409_090 Hb_000035_440--Hb_002045_230 Hb_005841_050 Hb_005841_050 Hb_000035_440--Hb_005841_050 Hb_005841_040 Hb_005841_040 Hb_000035_440--Hb_005841_040 Hb_002298_050 Hb_002298_050 Hb_000035_440--Hb_002298_050 Hb_017862_010 Hb_017862_010 Hb_000035_440--Hb_017862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.066 67.7745 47.9516 55.1356 183.085 216.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
260.276 875.762 293.434 31.9175 17.6588

CAGE analysis