Hb_002876_370

Information

Type -
Description -
Location Contig2876: 319771-324406
Sequence    

Annotation

kegg
ID vvi:100255442
description uncharacterized LOC100255442
nr
ID KJB81329.1
description hypothetical protein B456_013G140400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2VF33
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G140400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_370 0.0 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
2 Hb_001369_400 0.0993730895 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
3 Hb_001159_200 0.1183890459 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
4 Hb_000318_490 0.1299789803 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
5 Hb_000976_250 0.1333084186 - - -
6 Hb_003086_060 0.1476291891 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
7 Hb_000123_160 0.1503883359 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_002518_290 0.1509655454 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
9 Hb_000281_230 0.1518328554 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
10 Hb_000788_080 0.1550472345 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
11 Hb_003581_220 0.1555138068 - - unnamed protein product [Vitis vinifera]
12 Hb_011245_020 0.1592409285 - - Ferrochelatase [Medicago truncatula]
13 Hb_032969_030 0.1605985686 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_034585_050 0.1621158208 - - -
15 Hb_001511_140 0.1631968337 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
16 Hb_000592_060 0.1632420798 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
17 Hb_062135_020 0.1643703639 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
18 Hb_003043_120 0.165652012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006738_010 0.1677414972 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
20 Hb_003929_120 0.1678572387 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002876_370 Hb_002876_370 Hb_001369_400 Hb_001369_400 Hb_002876_370--Hb_001369_400 Hb_001159_200 Hb_001159_200 Hb_002876_370--Hb_001159_200 Hb_000318_490 Hb_000318_490 Hb_002876_370--Hb_000318_490 Hb_000976_250 Hb_000976_250 Hb_002876_370--Hb_000976_250 Hb_003086_060 Hb_003086_060 Hb_002876_370--Hb_003086_060 Hb_000123_160 Hb_000123_160 Hb_002876_370--Hb_000123_160 Hb_000819_070 Hb_000819_070 Hb_001369_400--Hb_000819_070 Hb_001369_400--Hb_001159_200 Hb_001369_400--Hb_000318_490 Hb_001369_400--Hb_000976_250 Hb_034585_050 Hb_034585_050 Hb_001369_400--Hb_034585_050 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_000318_490--Hb_000123_160 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_012539_020 Hb_012539_020 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_003086_060--Hb_002518_290 Hb_062135_020 Hb_062135_020 Hb_003086_060--Hb_062135_020 Hb_003185_050 Hb_003185_050 Hb_003086_060--Hb_003185_050 Hb_000236_150 Hb_000236_150 Hb_003086_060--Hb_000236_150 Hb_003086_060--Hb_001159_200 Hb_002918_140 Hb_002918_140 Hb_003086_060--Hb_002918_140 Hb_000123_160--Hb_062135_020 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.669829 0.154553 0.165064 0.699444 0.621712 2.09141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27002 10.682 7.20801 0.602248 1.65394

CAGE analysis