Hb_002878_010

Information

Type -
Description -
Location Contig2878: 60301-61428
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30067: 55923-61326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002878_010 0.0 - - -
2 Hb_001953_090 0.0711589586 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
3 Hb_000322_140 0.0868512447 - - hypothetical protein RCOM_1047200 [Ricinus communis]
4 Hb_004336_050 0.0918193639 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
5 Hb_004374_140 0.0947706389 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_001461_010 0.0952281535 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
7 Hb_172706_030 0.0972522314 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
8 Hb_002016_120 0.0981617612 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
9 Hb_005278_020 0.0992753479 - - PREDICTED: sorcin-like [Jatropha curcas]
10 Hb_000364_020 0.1009585516 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
11 Hb_008544_010 0.1013342881 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
12 Hb_005588_070 0.1022295003 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
13 Hb_000272_140 0.1028390605 - - Protein bem46, putative [Ricinus communis]
14 Hb_005867_020 0.1043311259 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
15 Hb_001842_040 0.1047224413 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
16 Hb_001284_030 0.1061787718 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_000042_200 0.1084118753 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
18 Hb_002918_290 0.1103311583 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
19 Hb_001158_150 0.1128581083 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
20 Hb_002631_020 0.1134035234 - - PREDICTED: protein FAM32A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002878_010 Hb_002878_010 Hb_001953_090 Hb_001953_090 Hb_002878_010--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_002878_010--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_004374_140 Hb_004374_140 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030 Hb_000042_200 Hb_000042_200 Hb_001953_090--Hb_000042_200 Hb_002918_290 Hb_002918_290 Hb_001953_090--Hb_002918_290 Hb_001953_090--Hb_000322_140 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001284_030 Hb_001284_030 Hb_001953_090--Hb_001284_030 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_000322_140--Hb_001461_010 Hb_000322_140--Hb_004374_140 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_004374_140--Hb_008544_010 Hb_004374_140--Hb_001461_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_001461_010--Hb_008544_010 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_140543_010 Hb_140543_010 Hb_172706_030--Hb_140543_010 Hb_172706_030--Hb_000672_120 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42072 2.53183 5.58517 19.7763 7.85798 20.5616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3918 35.2307 21.5069 4.8011 12.3952

CAGE analysis