Hb_002878_020

Information

Type -
Description -
Location Contig2878: 63677-68400
Sequence    

Annotation

kegg
ID rcu:RCOM_1402800
description mitochondrial carrier protein, putative
nr
ID XP_002516353.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID P10566
description Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS3 PE=1 SV=4
trembl
ID B9RRI4
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_1402800 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial rna-splicing protein mrs3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30069: 64162-68101 , PASA_asmbl_30070: 66068-68364
cDNA
(Sanger)
(ID:Location)		 024_G17.ab1: 67719-68358 , 040_H21.ab1: 67571-68361 , 041_D24.ab1: 67727-68361 , 043_M13.ab1: 67582-68361 , 045_K15.ab1: 67601-68358 , 053_F17.ab1: 67602-68361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002878_020 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_000250_060 0.06832746 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
3 Hb_009803_050 0.0765853503 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
4 Hb_011214_020 0.0777079421 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
5 Hb_086639_030 0.0794952789 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_001959_190 0.0807791807 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
7 Hb_001633_210 0.0809143996 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
8 Hb_008221_140 0.0835470227 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
9 Hb_000016_160 0.0839116397 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
10 Hb_001663_050 0.0843956837 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
11 Hb_012107_060 0.0855378138 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
12 Hb_000056_240 0.086125613 - - PREDICTED: cullin-3A [Jatropha curcas]
13 Hb_007416_320 0.0868785261 - - conserved hypothetical protein [Ricinus communis]
14 Hb_019263_020 0.0877801251 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
15 Hb_000732_130 0.0882366118 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
16 Hb_003053_020 0.0885113926 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
17 Hb_002046_180 0.0894738258 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_012019_010 0.0898257968 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
19 Hb_010812_120 0.09100619 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
20 Hb_000069_420 0.0915327823 - - Beclin-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002878_020 Hb_002878_020 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_010812_120 Hb_010812_120 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_000603_080 Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_009803_050--Hb_001959_190 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_000732_130 Hb_000732_130 Hb_011214_020--Hb_000732_130 Hb_007416_320 Hb_007416_320 Hb_011214_020--Hb_007416_320 Hb_001545_170 Hb_001545_170 Hb_011214_020--Hb_001545_170 Hb_011173_050 Hb_011173_050 Hb_011214_020--Hb_011173_050 Hb_005463_040 Hb_005463_040 Hb_011214_020--Hb_005463_040 Hb_001663_050 Hb_001663_050 Hb_086639_030--Hb_001663_050 Hb_086639_030--Hb_005463_040 Hb_086639_030--Hb_007416_320 Hb_172932_010 Hb_172932_010 Hb_086639_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_086639_030--Hb_003053_020 Hb_001959_190--Hb_020805_130 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_001633_210--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2886 12.0329 6.34598 7.54412 8.38528 9.05628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7104 24.6099 22.9764 12.6019 10.3957

CAGE analysis