Hb_002883_010

Information

Type -
Description -
Location Contig2883: 19311-32310
Sequence    

Annotation

kegg
ID rcu:RCOM_1102310
description RNA binding protein, putative
nr
ID XP_012077363.1
description PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
swissprot
ID Q7TS68
description Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
trembl
ID A0A067LEG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17240 PE=4 SV=1
Gene Ontology
ID GO:0003723
description methyltransferase nsun6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30086: 20088-20601 , PASA_asmbl_30087: 20620-28039 , PASA_asmbl_30088: 28125-30229 , PASA_asmbl_30089: 30251-47637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002883_010 0.0 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
2 Hb_001437_100 0.0494413338 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
3 Hb_002043_170 0.0567306645 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
4 Hb_000317_440 0.0578316173 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
5 Hb_031754_010 0.0619927688 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_002652_040 0.0624934934 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
7 Hb_000239_070 0.0641435011 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
8 Hb_000035_040 0.0655914598 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
9 Hb_005129_050 0.0658580209 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
10 Hb_000331_190 0.0668317969 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
11 Hb_000335_010 0.0675550435 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_001433_190 0.068063761 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
13 Hb_001301_210 0.0693280018 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
14 Hb_002235_320 0.0693806026 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
15 Hb_046615_020 0.0731411287 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
16 Hb_000002_440 0.0742413626 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_006002_030 0.0755048694 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
18 Hb_002820_040 0.0772602933 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007849_020 0.0775137539 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
20 Hb_000327_310 0.077756671 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_002883_010 Hb_002883_010 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_001437_100--Hb_002043_170 Hb_001437_100--Hb_000317_440 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_000335_010 Hb_000335_010 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_002043_170--Hb_000335_010 Hb_000631_150 Hb_000631_150 Hb_000317_440--Hb_000631_150 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_153547_010 Hb_153547_010 Hb_000317_440--Hb_153547_010 Hb_031754_010--Hb_000335_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_031754_010--Hb_000035_040 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_002652_040--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_002652_040--Hb_000331_190 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_000340_160 Hb_000340_160 Hb_000239_070--Hb_000340_160 Hb_000227_380 Hb_000227_380 Hb_000239_070--Hb_000227_380 Hb_000239_070--Hb_000331_190 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2394 8.34707 3.69761 3.05681 19.4596 21.1978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28789 4.12062 5.07523 7.512 4.94013

CAGE analysis