Hb_002883_030

Information

Type -
Description -
Location Contig2883: 126903-128912
Sequence    

Annotation

kegg
ID rcu:RCOM_1102530
description electron transporter, putative
nr
ID XP_012077391.1
description PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
swissprot
ID Q3AQ69
description UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1601 PE=3 SV=1
trembl
ID A0A067LLJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30092: 115465-129208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002883_030 0.0 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
2 Hb_000345_160 0.0557854273 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_000300_270 0.0559592359 - - cationic amino acid transporter, putative [Ricinus communis]
4 Hb_002897_090 0.0592105994 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001662_100 0.0627626059 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
6 Hb_000049_020 0.0658001126 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_004037_020 0.0692324697 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
8 Hb_008511_020 0.0693067382 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
9 Hb_004452_110 0.0699829758 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
10 Hb_003040_050 0.0703148937 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
11 Hb_011249_070 0.0708784267 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
12 Hb_000787_160 0.0715590989 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
13 Hb_000773_040 0.0726630949 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
14 Hb_005015_060 0.0732821203 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
15 Hb_002027_080 0.0735510925 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
16 Hb_000441_090 0.073777282 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
17 Hb_006663_060 0.0743927563 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
18 Hb_003498_080 0.0748290548 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
19 Hb_001856_180 0.0751874847 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
20 Hb_003581_200 0.0753833226 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]

Gene co-expression network

sample Hb_002883_030 Hb_002883_030 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_000300_270--Hb_000049_020 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_000300_270--Hb_004452_110 Hb_000300_270--Hb_000345_160 Hb_002027_080 Hb_002027_080 Hb_002897_090--Hb_002027_080 Hb_000359_210 Hb_000359_210 Hb_002897_090--Hb_000359_210 Hb_004679_030 Hb_004679_030 Hb_002897_090--Hb_004679_030 Hb_000441_090 Hb_000441_090 Hb_002897_090--Hb_000441_090 Hb_122968_010 Hb_122968_010 Hb_002897_090--Hb_122968_010 Hb_002414_050 Hb_002414_050 Hb_001662_100--Hb_002414_050 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_003544_160 Hb_003544_160 Hb_001662_100--Hb_003544_160 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004037_020--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.08137 12.7784 13.3514 20.4055 9.39893 14.4551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.04887 9.34844 7.41869 13.1047 20.608

CAGE analysis