Hb_002888_010

Information

Type -
Description -
Location Contig2888: 6427-10309
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_010 0.0 - - -
2 Hb_000608_460 0.2080541754 - - -
3 Hb_014568_020 0.2558356327 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
4 Hb_162633_010 0.2596304191 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
5 Hb_000310_070 0.2791696642 - - BnaA06g08330D [Brassica napus]
6 Hb_148209_060 0.2794970388 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
7 Hb_003144_050 0.2854045837 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
8 Hb_088538_010 0.2881296433 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
9 Hb_000915_030 0.2978348529 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_004734_050 0.3073063435 - - -
11 Hb_100485_010 0.3165179614 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
12 Hb_000429_090 0.3168220049 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
13 Hb_178063_010 0.3172504804 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
14 Hb_162033_010 0.3240550767 - - -
15 Hb_000258_450 0.3311247685 - - -
16 Hb_003124_060 0.3313394267 - - Beta-ureidopropionase, putative [Ricinus communis]
17 Hb_000906_130 0.3329837625 - - -
18 Hb_000046_160 0.3373307355 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
19 Hb_004218_210 0.3379356162 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
20 Hb_181240_010 0.3389564175 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_002888_010 Hb_002888_010 Hb_000608_460 Hb_000608_460 Hb_002888_010--Hb_000608_460 Hb_014568_020 Hb_014568_020 Hb_002888_010--Hb_014568_020 Hb_162633_010 Hb_162633_010 Hb_002888_010--Hb_162633_010 Hb_000310_070 Hb_000310_070 Hb_002888_010--Hb_000310_070 Hb_148209_060 Hb_148209_060 Hb_002888_010--Hb_148209_060 Hb_003144_050 Hb_003144_050 Hb_002888_010--Hb_003144_050 Hb_000608_460--Hb_014568_020 Hb_000915_030 Hb_000915_030 Hb_000608_460--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_000608_460--Hb_004324_080 Hb_181240_010 Hb_181240_010 Hb_000608_460--Hb_181240_010 Hb_004448_060 Hb_004448_060 Hb_000608_460--Hb_004448_060 Hb_014568_020--Hb_000915_030 Hb_014568_020--Hb_181240_010 Hb_000363_150 Hb_000363_150 Hb_014568_020--Hb_000363_150 Hb_014568_020--Hb_004324_080 Hb_169780_010 Hb_169780_010 Hb_162633_010--Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_162633_010--Hb_034658_010 Hb_001172_090 Hb_001172_090 Hb_162633_010--Hb_001172_090 Hb_007479_030 Hb_007479_030 Hb_162633_010--Hb_007479_030 Hb_010977_010 Hb_010977_010 Hb_162633_010--Hb_010977_010 Hb_000429_090 Hb_000429_090 Hb_000310_070--Hb_000429_090 Hb_002936_080 Hb_002936_080 Hb_000310_070--Hb_002936_080 Hb_000530_120 Hb_000530_120 Hb_000310_070--Hb_000530_120 Hb_073490_020 Hb_073490_020 Hb_000310_070--Hb_073490_020 Hb_004162_260 Hb_004162_260 Hb_000310_070--Hb_004162_260 Hb_091194_010 Hb_091194_010 Hb_000310_070--Hb_091194_010 Hb_088538_010 Hb_088538_010 Hb_148209_060--Hb_088538_010 Hb_148209_060--Hb_003144_050 Hb_000545_170 Hb_000545_170 Hb_148209_060--Hb_000545_170 Hb_003913_140 Hb_003913_140 Hb_148209_060--Hb_003913_140 Hb_001902_120 Hb_001902_120 Hb_148209_060--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_148209_060--Hb_002045_200 Hb_173281_010 Hb_173281_010 Hb_003144_050--Hb_173281_010 Hb_000130_030 Hb_000130_030 Hb_003144_050--Hb_000130_030 Hb_003144_050--Hb_088538_010 Hb_003286_020 Hb_003286_020 Hb_003144_050--Hb_003286_020 Hb_104000_010 Hb_104000_010 Hb_003144_050--Hb_104000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712501 0.280493 0.402971 0 0.438025

CAGE analysis