Hb_002888_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2888: 13619-16307
Sequence    

Annotation

kegg
ID pxb:103956598
description disease resistance protein RPM1-like
nr
ID XP_012077051.1
description PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067LB31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30137: 15086-15497 , PASA_asmbl_30138: 15619-15774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
2 Hb_002027_250 0.0573079311 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_017358_030 0.0706107361 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
4 Hb_002739_100 0.0706722903 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_002346_020 0.0786000855 - - -
6 Hb_047503_010 0.0844511023 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
7 Hb_005779_060 0.0858073981 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
8 Hb_027295_050 0.0865716836 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
9 Hb_077562_050 0.0871837634 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
10 Hb_000016_250 0.0880134235 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
11 Hb_000096_070 0.0884740054 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
12 Hb_006913_030 0.0903108051 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
13 Hb_000165_250 0.0909152212 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
14 Hb_002518_140 0.0918112443 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
15 Hb_007317_200 0.0918989198 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002110_150 0.0922859914 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
17 Hb_002256_030 0.0929615274 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001552_020 0.0929947866 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
19 Hb_000917_060 0.093519247 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_004221_020 0.0935549159 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002888_030 Hb_002888_030 Hb_002027_250 Hb_002027_250 Hb_002888_030--Hb_002027_250 Hb_017358_030 Hb_017358_030 Hb_002888_030--Hb_017358_030 Hb_002739_100 Hb_002739_100 Hb_002888_030--Hb_002739_100 Hb_002346_020 Hb_002346_020 Hb_002888_030--Hb_002346_020 Hb_047503_010 Hb_047503_010 Hb_002888_030--Hb_047503_010 Hb_005779_060 Hb_005779_060 Hb_002888_030--Hb_005779_060 Hb_002044_080 Hb_002044_080 Hb_002027_250--Hb_002044_080 Hb_001552_020 Hb_001552_020 Hb_002027_250--Hb_001552_020 Hb_002027_250--Hb_002346_020 Hb_000096_070 Hb_000096_070 Hb_002027_250--Hb_000096_070 Hb_000453_170 Hb_000453_170 Hb_002027_250--Hb_000453_170 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_007389_010 Hb_007389_010 Hb_017358_030--Hb_007389_010 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_000876_070 Hb_000876_070 Hb_002739_100--Hb_000876_070 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_002346_020--Hb_001552_020 Hb_002928_130 Hb_002928_130 Hb_002346_020--Hb_002928_130 Hb_002346_020--Hb_000096_070 Hb_047503_010--Hb_001512_060 Hb_011609_100 Hb_011609_100 Hb_047503_010--Hb_011609_100 Hb_002232_440 Hb_002232_440 Hb_047503_010--Hb_002232_440 Hb_003125_200 Hb_003125_200 Hb_047503_010--Hb_003125_200 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41214 2.27593 1.85834 1.31734 3.97509 2.18386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59064 4.06352 4.06935 1.96953 2.34102

CAGE analysis