Hb_002888_070

Information

Type -
Description -
Location Contig2888: 86651-109129
Sequence    

Annotation

kegg
ID pxb:103947954
description tubulin-folding cofactor E
nr
ID XP_009357218.1
description PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
swissprot
ID Q8GRL7
description Tubulin-folding cofactor E OS=Arabidopsis thaliana GN=TFCE PE=2 SV=1
trembl
ID M5XWF5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003930mg PE=4 SV=1
Gene Ontology
ID GO:0009507
description tubulin-folding cofactor e isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30144: 86672-99563 , PASA_asmbl_30145: 97313-97431 , PASA_asmbl_30146: 100710-109120 , PASA_asmbl_30147: 105208-105357 , PASA_asmbl_30148: 105842-106160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_070 0.0 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
2 Hb_000868_060 0.0521189005 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
3 Hb_003126_100 0.0577101606 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
4 Hb_000480_010 0.0634364994 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000914_080 0.0681274696 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_001102_080 0.0693916265 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
7 Hb_011930_080 0.0701538778 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
8 Hb_001427_190 0.0723238367 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
9 Hb_002078_100 0.0786306606 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
10 Hb_004994_040 0.0793434987 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
11 Hb_000648_100 0.080745749 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
12 Hb_001085_320 0.0813571503 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
13 Hb_000395_020 0.0815835797 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
14 Hb_000002_490 0.0822017525 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
15 Hb_011609_170 0.0829755803 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
16 Hb_011174_090 0.0830234257 - - PREDICTED: fidgetin-like protein 1 [Jatropha curcas]
17 Hb_001050_010 0.0835589223 - - Advillin [Gossypium arboreum]
18 Hb_019654_040 0.0858590507 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
19 Hb_028308_010 0.0863591812 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
20 Hb_009296_010 0.0866321976 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002888_070 Hb_002888_070 Hb_000868_060 Hb_000868_060 Hb_002888_070--Hb_000868_060 Hb_003126_100 Hb_003126_100 Hb_002888_070--Hb_003126_100 Hb_000480_010 Hb_000480_010 Hb_002888_070--Hb_000480_010 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_001102_080 Hb_001102_080 Hb_002888_070--Hb_001102_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080 Hb_000395_020 Hb_000395_020 Hb_000868_060--Hb_000395_020 Hb_001050_010 Hb_001050_010 Hb_000868_060--Hb_001050_010 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030 Hb_000480_010--Hb_001102_080 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_000329_130 Hb_000329_130 Hb_000914_080--Hb_000329_130 Hb_009151_020 Hb_009151_020 Hb_000914_080--Hb_009151_020 Hb_017895_020 Hb_017895_020 Hb_000914_080--Hb_017895_020 Hb_005408_020 Hb_005408_020 Hb_000914_080--Hb_005408_020 Hb_001102_080--Hb_007044_040 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_001427_190 Hb_001427_190 Hb_011930_080--Hb_001427_190 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_019654_040 Hb_019654_040 Hb_011930_080--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_011930_080--Hb_000648_100 Hb_002078_100 Hb_002078_100 Hb_011930_080--Hb_002078_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0053 7.52733 11.1084 7.49712 19.446 16.4842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59498 3.89563 6.05094 9.85385 5.42595

CAGE analysis